Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC16.14■□□□□ 0.17
COL6A3P12111 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC16.14■□□□□ 0.17
COL6A3P12111 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A3P12111 PAM16-211ENST00000575848 518 ntTSL 3 BASIC16.14■□□□□ 0.17
COL6A3P12111 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
COL6A3P12111 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC16.14■□□□□ 0.17
COL6A3P12111 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A3P12111 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
COL6A3P12111 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A3P12111 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
COL6A3P12111 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A3P12111 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A3P12111 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A3P12111 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A3P12111 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.14■□□□□ 0.17
COL6A3P12111 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
COL6A3P12111 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
COL6A3P12111 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC16.14■□□□□ 0.17
COL6A3P12111 CHMP1AP1-201ENST00000445563 662 ntBASIC16.14■□□□□ 0.17
COL6A3P12111 POU5F1P2-201ENST00000521750 823 ntBASIC16.14■□□□□ 0.17
COL6A3P12111 CTBP2P6-201ENST00000526402 1229 ntBASIC16.14■□□□□ 0.17
COL6A3P12111 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A3P12111 MIR3677-201ENST00000578964 60 ntBASIC16.14■□□□□ 0.17
COL6A3P12111 MIR4783-201ENST00000580343 82 ntBASIC16.14■□□□□ 0.17
COL6A3P12111 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC16.14■□□□□ 0.17
COL6A3P12111 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.14■□□□□ 0.17
COL6A3P12111 UBALD1-205ENST00000590891 2641 ntBASIC16.14■□□□□ 0.17
COL6A3P12111 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A3P12111 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A3P12111 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A3P12111 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A3P12111 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
COL6A3P12111 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A3P12111 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.14■□□□□ 0.17
COL6A3P12111 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A3P12111 BCL2L12P1-201ENST00000508390 733 ntBASIC16.14■□□□□ 0.17
COL6A3P12111 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC16.14■□□□□ 0.17
COL6A3P12111 AC055811.3-201ENST00000584952 686 ntBASIC16.14■□□□□ 0.17
COL6A3P12111 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A3P12111 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A3P12111 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
COL6A3P12111 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.13■□□□□ 0.17
COL6A3P12111 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A3P12111 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A3P12111 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A3P12111 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
COL6A3P12111 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A3P12111 HNRNPA1P41-201ENST00000397777 928 ntBASIC16.13■□□□□ 0.17
COL6A3P12111 AC136604.1-201ENST00000418535 575 ntBASIC16.13■□□□□ 0.17
COL6A3P12111 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC16.13■□□□□ 0.17
COL6A3P12111 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A3P12111 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC16.13■□□□□ 0.17
COL6A3P12111 AC093909.3-201ENST00000504783 336 ntBASIC16.13■□□□□ 0.17
COL6A3P12111 MIR5001-201ENST00000580185 100 ntBASIC16.13■□□□□ 0.17
COL6A3P12111 AC011462.4-201ENST00000616866 449 ntBASIC16.13■□□□□ 0.17
COL6A3P12111 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A3P12111 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.13■□□□□ 0.17
COL6A3P12111 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A3P12111 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A3P12111 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.13■□□□□ 0.17
COL6A3P12111 AL603756.1-201ENST00000606511 2163 ntBASIC16.13■□□□□ 0.17
COL6A3P12111 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A3P12111 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A3P12111 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A3P12111 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.13■□□□□ 0.17
COL6A3P12111 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
COL6A3P12111 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A3P12111 CCL25-202ENST00000315626 450 ntTSL 2 BASIC16.13■□□□□ 0.17
COL6A3P12111 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC16.13■□□□□ 0.17
COL6A3P12111 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC16.13■□□□□ 0.17
COL6A3P12111 NUDT4P2-201ENST00000578341 546 ntBASIC16.13■□□□□ 0.17
COL6A3P12111 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC16.13■□□□□ 0.17
COL6A3P12111 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A3P12111 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
COL6A3P12111 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A3P12111 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A3P12111 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
COL6A3P12111 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A3P12111 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A3P12111 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A3P12111 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A3P12111 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A3P12111 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A3P12111 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A3P12111 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A3P12111 TUBB8P7-204ENST00000567960 1332 ntBASIC16.12■□□□□ 0.17
COL6A3P12111 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
COL6A3P12111 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.12■□□□□ 0.17
COL6A3P12111 HIST2H2BA-201ENST00000412169 381 ntBASIC16.12■□□□□ 0.17
COL6A3P12111 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC16.12■□□□□ 0.17
COL6A3P12111 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC16.12■□□□□ 0.17
COL6A3P12111 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC16.12■□□□□ 0.17
COL6A3P12111 MED11-202ENST00000573708 802 ntTSL 2 BASIC16.12■□□□□ 0.17
COL6A3P12111 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.12■□□□□ 0.17
COL6A3P12111 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A3P12111 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A3P12111 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A3P12111 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC16.12■□□□□ 0.17
COL6A3P12111 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC16.12■□□□□ 0.17
COL6A3P12111 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms