Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.73■□□□□ 0.27
APOEP02649 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.73■□□□□ 0.27
APOEP02649 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.73■□□□□ 0.27
APOEP02649 AC093214.1-201ENST00000511688 1107 ntBASIC16.73■□□□□ 0.27
APOEP02649 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.73■□□□□ 0.27
APOEP02649 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.73■□□□□ 0.27
APOEP02649 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 AL133215.2-201ENST00000609242 977 ntBASIC16.73■□□□□ 0.27
APOEP02649 AL390754.1-201ENST00000619088 582 ntBASIC16.73■□□□□ 0.27
APOEP02649 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
APOEP02649 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
APOEP02649 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
APOEP02649 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
APOEP02649 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
APOEP02649 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
APOEP02649 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
APOEP02649 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
APOEP02649 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC16.72■□□□□ 0.27
APOEP02649 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
APOEP02649 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.72■□□□□ 0.27
APOEP02649 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
APOEP02649 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
APOEP02649 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
APOEP02649 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.72■□□□□ 0.27
APOEP02649 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
APOEP02649 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
APOEP02649 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
APOEP02649 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.72■□□□□ 0.27
APOEP02649 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
APOEP02649 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.72■□□□□ 0.27
APOEP02649 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.72■□□□□ 0.27
APOEP02649 BASP1P1-201ENST00000430708 665 ntBASIC16.72■□□□□ 0.27
APOEP02649 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
APOEP02649 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
APOEP02649 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
APOEP02649 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
APOEP02649 AC097493.3-201ENST00000509725 367 ntBASIC16.72■□□□□ 0.27
APOEP02649 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
APOEP02649 AL079307.3-201ENST00000556114 283 ntBASIC16.72■□□□□ 0.27
APOEP02649 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
APOEP02649 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.72■□□□□ 0.27
APOEP02649 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.72■□□□□ 0.27
APOEP02649 AC005498.2-205ENST00000593218 784 ntBASIC16.72■□□□□ 0.27
APOEP02649 AL138828.2-201ENST00000615812 383 ntBASIC16.72■□□□□ 0.27
APOEP02649 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
APOEP02649 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
APOEP02649 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
APOEP02649 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
APOEP02649 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.72■□□□□ 0.27
APOEP02649 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
APOEP02649 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.72■□□□□ 0.27
APOEP02649 CYP4F24P-201ENST00000586049 1580 ntBASIC16.72■□□□□ 0.27
APOEP02649 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
APOEP02649 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
APOEP02649 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
APOEP02649 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.71■□□□□ 0.27
APOEP02649 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.71■□□□□ 0.27
APOEP02649 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.71■□□□□ 0.27
APOEP02649 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.71■□□□□ 0.27
APOEP02649 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
APOEP02649 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.71■□□□□ 0.27
APOEP02649 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.71■□□□□ 0.27
APOEP02649 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
APOEP02649 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
APOEP02649 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.71■□□□□ 0.27
APOEP02649 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.71■□□□□ 0.27
APOEP02649 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
APOEP02649 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.71■□□□□ 0.27
APOEP02649 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.71■□□□□ 0.27
APOEP02649 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.71■□□□□ 0.27
APOEP02649 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.71■□□□□ 0.27
APOEP02649 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.71■□□□□ 0.27
APOEP02649 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.71■□□□□ 0.27
APOEP02649 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
APOEP02649 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
APOEP02649 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC16.71■□□□□ 0.27
APOEP02649 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
APOEP02649 AP001282.1-201ENST00000531301 1499 ntBASIC16.71■□□□□ 0.27
APOEP02649 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
APOEP02649 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.71■□□□□ 0.27
APOEP02649 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
APOEP02649 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
APOEP02649 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
APOEP02649 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.71■□□□□ 0.27
APOEP02649 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
APOEP02649 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
APOEP02649 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
APOEP02649 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms