Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXN3O00409 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.05■□□□□ 0.32
FOXN3O00409 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.05■□□□□ 0.32
FOXN3O00409 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.05■□□□□ 0.32
FOXN3O00409 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
FOXN3O00409 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
FOXN3O00409 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.05■□□□□ 0.32
FOXN3O00409 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.05■□□□□ 0.32
FOXN3O00409 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.05■□□□□ 0.32
FOXN3O00409 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
FOXN3O00409 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
FOXN3O00409 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXN3O00409 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
FOXN3O00409 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.05■□□□□ 0.32
FOXN3O00409 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
FOXN3O00409 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC17.05■□□□□ 0.32
FOXN3O00409 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXN3O00409 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXN3O00409 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.05■□□□□ 0.32
FOXN3O00409 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXN3O00409 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
FOXN3O00409 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
FOXN3O00409 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
FOXN3O00409 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXN3O00409 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXN3O00409 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXN3O00409 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
FOXN3O00409 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXN3O00409 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
FOXN3O00409 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXN3O00409 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
FOXN3O00409 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
FOXN3O00409 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXN3O00409 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC17.04■□□□□ 0.32
FOXN3O00409 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
FOXN3O00409 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXN3O00409 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXN3O00409 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
FOXN3O00409 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.04■□□□□ 0.32
FOXN3O00409 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.04■□□□□ 0.32
FOXN3O00409 HIST3H2BA-201ENST00000436555 524 ntBASIC17.04■□□□□ 0.32
FOXN3O00409 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.04■□□□□ 0.32
FOXN3O00409 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
FOXN3O00409 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
FOXN3O00409 HNRNPUP1-201ENST00000554987 333 ntBASIC17.04■□□□□ 0.32
FOXN3O00409 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.04■□□□□ 0.32
FOXN3O00409 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.04■□□□□ 0.32
FOXN3O00409 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXN3O00409 AC027612.4-201ENST00000605371 583 ntBASIC17.04■□□□□ 0.32
FOXN3O00409 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.04■□□□□ 0.32
FOXN3O00409 AL596442.2-201ENST00000610240 980 ntBASIC17.04■□□□□ 0.32
FOXN3O00409 AC007967.4-201ENST00000614700 386 ntBASIC17.04■□□□□ 0.32
FOXN3O00409 AP001059.3-201ENST00000619053 235 ntBASIC17.04■□□□□ 0.32
FOXN3O00409 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXN3O00409 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXN3O00409 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.04■□□□□ 0.32
FOXN3O00409 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
FOXN3O00409 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
FOXN3O00409 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
FOXN3O00409 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.04■□□□□ 0.32
FOXN3O00409 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.04■□□□□ 0.32
FOXN3O00409 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC17.04■□□□□ 0.32
FOXN3O00409 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC17.04■□□□□ 0.32
FOXN3O00409 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXN3O00409 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXN3O00409 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
FOXN3O00409 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXN3O00409 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
FOXN3O00409 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.03■□□□□ 0.32
FOXN3O00409 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.03■□□□□ 0.32
FOXN3O00409 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 AC127383.1-201ENST00000444697 1800 ntBASIC17.03■□□□□ 0.32
FOXN3O00409 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
FOXN3O00409 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.03■□□□□ 0.32
FOXN3O00409 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
FOXN3O00409 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 SPDYE17-201ENST00000412399 783 ntBASIC17.03■□□□□ 0.32
FOXN3O00409 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.03■□□□□ 0.32
FOXN3O00409 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.03■□□□□ 0.32
FOXN3O00409 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.03■□□□□ 0.32
FOXN3O00409 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.03■□□□□ 0.32
FOXN3O00409 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
FOXN3O00409 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXN3O00409 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms