Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.35■□□□□ 0.53
CTCFP49711 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC18.35■□□□□ 0.53
CTCFP49711 CYP51A1P3-201ENST00000400072 1428 ntBASIC18.35■□□□□ 0.53
CTCFP49711 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CTCFP49711 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.35■□□□□ 0.53
CTCFP49711 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC18.35■□□□□ 0.53
CTCFP49711 VDAC1P7-201ENST00000462417 847 ntBASIC18.35■□□□□ 0.53
CTCFP49711 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC18.35■□□□□ 0.53
CTCFP49711 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.35■□□□□ 0.53
CTCFP49711 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 NUP210P1-202ENST00000504322 710 ntBASIC18.35■□□□□ 0.53
CTCFP49711 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.35■□□□□ 0.53
CTCFP49711 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC18.35■□□□□ 0.53
CTCFP49711 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC18.35■□□□□ 0.53
CTCFP49711 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC18.35■□□□□ 0.53
CTCFP49711 RNF146-211ENST00000609447 607 ntTSL 4 BASIC18.35■□□□□ 0.53
CTCFP49711 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CTCFP49711 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.35■□□□□ 0.53
CTCFP49711 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CTCFP49711 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CTCFP49711 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CTCFP49711 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CTCFP49711 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CTCFP49711 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CTCFP49711 AL138688.1-201ENST00000624851 1594 ntBASIC18.34■□□□□ 0.53
CTCFP49711 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CTCFP49711 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.34■□□□□ 0.53
CTCFP49711 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CTCFP49711 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CTCFP49711 TUBBP5-203ENST00000508529 1334 ntBASIC18.34■□□□□ 0.53
CTCFP49711 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CTCFP49711 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CTCFP49711 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CTCFP49711 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.34■□□□□ 0.53
CTCFP49711 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC18.34■□□□□ 0.53
CTCFP49711 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC18.34■□□□□ 0.53
CTCFP49711 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC18.34■□□□□ 0.53
CTCFP49711 AC044849.1-201ENST00000519737 1188 ntBASIC18.34■□□□□ 0.53
CTCFP49711 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC18.34■□□□□ 0.53
CTCFP49711 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CTCFP49711 AP001065.2-201ENST00000617205 644 ntBASIC18.34■□□□□ 0.53
CTCFP49711 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.34■□□□□ 0.53
CTCFP49711 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.34■□□□□ 0.53
CTCFP49711 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CTCFP49711 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CTCFP49711 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CTCFP49711 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CTCFP49711 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.34■□□□□ 0.53
CTCFP49711 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CTCFP49711 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CTCFP49711 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CTCFP49711 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
CTCFP49711 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CTCFP49711 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CTCFP49711 AL391005.1-201ENST00000623953 2435 ntBASIC18.33■□□□□ 0.53
CTCFP49711 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CTCFP49711 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC18.33■□□□□ 0.53
CTCFP49711 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.33■□□□□ 0.53
CTCFP49711 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CTCFP49711 LINC00304-203ENST00000565008 1864 ntBASIC18.33■□□□□ 0.53
CTCFP49711 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CTCFP49711 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CTCFP49711 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CTCFP49711 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CTCFP49711 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.33■□□□□ 0.53
CTCFP49711 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CTCFP49711 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.33■□□□□ 0.53
CTCFP49711 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CTCFP49711 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
CTCFP49711 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CTCFP49711 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC18.33■□□□□ 0.52
CTCFP49711 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CTCFP49711 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CTCFP49711 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC18.33■□□□□ 0.52
CTCFP49711 AC234782.1-201ENST00000451950 919 ntBASIC18.33■□□□□ 0.52
CTCFP49711 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC18.33■□□□□ 0.52
CTCFP49711 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC18.33■□□□□ 0.52
CTCFP49711 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC18.33■□□□□ 0.52
CTCFP49711 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CTCFP49711 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC18.33■□□□□ 0.52
CTCFP49711 AC024681.1-201ENST00000521917 487 ntBASIC18.33■□□□□ 0.52
CTCFP49711 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms