Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.11■□□□□ 0.17
VIMP08670 AC012306.2-201ENST00000609350 630 ntBASIC16.11■□□□□ 0.17
VIMP08670 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
VIMP08670 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
VIMP08670 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
VIMP08670 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
VIMP08670 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
VIMP08670 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
VIMP08670 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC16.11■□□□□ 0.17
VIMP08670 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VIMP08670 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VIMP08670 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VIMP08670 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC16.1■□□□□ 0.17
VIMP08670 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 AC011477.6-201ENST00000604980 1927 ntBASIC16.1■□□□□ 0.17
VIMP08670 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
VIMP08670 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
VIMP08670 AC005521.1-201ENST00000393351 872 ntBASIC16.1■□□□□ 0.17
VIMP08670 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.1■□□□□ 0.17
VIMP08670 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.1■□□□□ 0.17
VIMP08670 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC16.1■□□□□ 0.17
VIMP08670 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.1■□□□□ 0.17
VIMP08670 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.1■□□□□ 0.17
VIMP08670 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC16.1■□□□□ 0.17
VIMP08670 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.1■□□□□ 0.17
VIMP08670 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.1■□□□□ 0.17
VIMP08670 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.1■□□□□ 0.17
VIMP08670 AC064862.7-201ENST00000604520 867 ntBASIC16.1■□□□□ 0.17
VIMP08670 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.1■□□□□ 0.17
VIMP08670 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.1■□□□□ 0.17
VIMP08670 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.1■□□□□ 0.17
VIMP08670 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.1■□□□□ 0.17
VIMP08670 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VIMP08670 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
VIMP08670 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.1■□□□□ 0.17
VIMP08670 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.1■□□□□ 0.17
VIMP08670 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VIMP08670 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VIMP08670 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
VIMP08670 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC16.1■□□□□ 0.17
VIMP08670 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VIMP08670 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
VIMP08670 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VIMP08670 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VIMP08670 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
VIMP08670 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC16.09■□□□□ 0.17
VIMP08670 MROH4P-201ENST00000431302 1578 ntBASIC16.09■□□□□ 0.17
VIMP08670 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC16.09■□□□□ 0.17
VIMP08670 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
VIMP08670 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VIMP08670 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VIMP08670 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
VIMP08670 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC16.09■□□□□ 0.17
VIMP08670 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VIMP08670 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VIMP08670 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.09■□□□□ 0.17
VIMP08670 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
VIMP08670 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.09■□□□□ 0.17
VIMP08670 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VIMP08670 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.09■□□□□ 0.17
VIMP08670 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VIMP08670 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.09■□□□□ 0.17
VIMP08670 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.09■□□□□ 0.17
VIMP08670 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.09■□□□□ 0.17
VIMP08670 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.09■□□□□ 0.17
VIMP08670 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.09■□□□□ 0.17
VIMP08670 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.09■□□□□ 0.17
VIMP08670 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VIMP08670 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
VIMP08670 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VIMP08670 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VIMP08670 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VIMP08670 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
VIMP08670 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms