Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CACNA1FO60840 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CACNA1FO60840 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CACNA1FO60840 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CACNA1FO60840 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CACNA1FO60840 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CACNA1FO60840 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CACNA1FO60840 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CACNA1FO60840 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC19.71■□□□□ 0.75
CACNA1FO60840 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC19.71■□□□□ 0.75
CACNA1FO60840 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
CACNA1FO60840 GPX4-206ENST00000588919 803 ntTSL 2 BASIC19.71■□□□□ 0.75
CACNA1FO60840 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CACNA1FO60840 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CACNA1FO60840 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CACNA1FO60840 AC087481.3-201ENST00000602886 1894 ntBASIC19.71■□□□□ 0.75
CACNA1FO60840 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CACNA1FO60840 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC19.71■□□□□ 0.75
CACNA1FO60840 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CACNA1FO60840 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CACNA1FO60840 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.7■□□□□ 0.74
CACNA1FO60840 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CACNA1FO60840 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC19.7■□□□□ 0.74
CACNA1FO60840 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC19.7■□□□□ 0.74
CACNA1FO60840 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CACNA1FO60840 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CACNA1FO60840 C1QBPP1-201ENST00000400117 770 ntBASIC19.7■□□□□ 0.74
CACNA1FO60840 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC19.7■□□□□ 0.74
CACNA1FO60840 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC19.7■□□□□ 0.74
CACNA1FO60840 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC19.7■□□□□ 0.74
CACNA1FO60840 ABBA01031660.1-201ENST00000635219 756 ntBASIC19.7■□□□□ 0.74
CACNA1FO60840 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC19.7■□□□□ 0.74
CACNA1FO60840 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
CACNA1FO60840 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CACNA1FO60840 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CACNA1FO60840 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CACNA1FO60840 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.7■□□□□ 0.74
CACNA1FO60840 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CACNA1FO60840 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CACNA1FO60840 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CACNA1FO60840 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CACNA1FO60840 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC19.7■□□□□ 0.74
CACNA1FO60840 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CACNA1FO60840 NME2P1-201ENST00000426182 414 ntBASIC19.7■□□□□ 0.74
CACNA1FO60840 INE1-201ENST00000456273 945 ntBASIC19.7■□□□□ 0.74
CACNA1FO60840 IGHV3-71-201ENST00000523324 359 ntBASIC19.7■□□□□ 0.74
CACNA1FO60840 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CACNA1FO60840 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CACNA1FO60840 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC19.7■□□□□ 0.74
CACNA1FO60840 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CACNA1FO60840 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1FO60840 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1FO60840 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1FO60840 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1FO60840 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC19.69■□□□□ 0.74
CACNA1FO60840 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
CACNA1FO60840 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1FO60840 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1FO60840 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
CACNA1FO60840 AC119751.2-201ENST00000504529 210 ntBASIC19.69■□□□□ 0.74
CACNA1FO60840 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
CACNA1FO60840 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC19.69■□□□□ 0.74
CACNA1FO60840 AC025181.2-201ENST00000606994 802 ntBASIC19.69■□□□□ 0.74
CACNA1FO60840 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1FO60840 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CACNA1FO60840 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1FO60840 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1FO60840 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1FO60840 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1FO60840 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1FO60840 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1FO60840 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CACNA1FO60840 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1FO60840 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1FO60840 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CACNA1FO60840 AL645937.2-201ENST00000396808 931 ntBASIC19.68■□□□□ 0.74
CACNA1FO60840 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC19.68■□□□□ 0.74
CACNA1FO60840 AC093433.1-201ENST00000458048 571 ntBASIC19.68■□□□□ 0.74
CACNA1FO60840 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CACNA1FO60840 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
CACNA1FO60840 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
CACNA1FO60840 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC19.68■□□□□ 0.74
CACNA1FO60840 METTL26-214ENST00000614890 801 ntTSL 3 BASIC19.68■□□□□ 0.74
CACNA1FO60840 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC19.68■□□□□ 0.74
CACNA1FO60840 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
CACNA1FO60840 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC19.68■□□□□ 0.74
CACNA1FO60840 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1FO60840 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1FO60840 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1FO60840 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CACNA1FO60840 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19.68■□□□□ 0.74
CACNA1FO60840 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CACNA1FO60840 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC19.68■□□□□ 0.74
CACNA1FO60840 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CACNA1FO60840 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC19.68■□□□□ 0.74
CACNA1FO60840 BRF1-202ENST00000379932 884 ntTSL 5 BASIC19.68■□□□□ 0.74
CACNA1FO60840 U91328.1-201ENST00000437528 223 ntBASIC19.68■□□□□ 0.74
CACNA1FO60840 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC19.68■□□□□ 0.74
CACNA1FO60840 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
CACNA1FO60840 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms