Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VTA1Q9NP79 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC17.72■□□□□ 0.43
VTA1Q9NP79 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.72■□□□□ 0.43
VTA1Q9NP79 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VTA1Q9NP79 TECR-220ENST00000600083 1204 ntTSL 2 BASIC17.72■□□□□ 0.43
VTA1Q9NP79 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
VTA1Q9NP79 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.72■□□□□ 0.43
VTA1Q9NP79 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.72■□□□□ 0.43
VTA1Q9NP79 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VTA1Q9NP79 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VTA1Q9NP79 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
VTA1Q9NP79 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VTA1Q9NP79 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VTA1Q9NP79 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.72■□□□□ 0.43
VTA1Q9NP79 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VTA1Q9NP79 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
VTA1Q9NP79 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VTA1Q9NP79 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC17.72■□□□□ 0.43
VTA1Q9NP79 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VTA1Q9NP79 USE1-206ENST00000595101 1776 ntTSL 2 BASIC17.71■□□□□ 0.43
VTA1Q9NP79 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VTA1Q9NP79 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VTA1Q9NP79 AC011676.5-201ENST00000624864 2660 ntBASIC17.71■□□□□ 0.43
VTA1Q9NP79 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VTA1Q9NP79 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VTA1Q9NP79 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
VTA1Q9NP79 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VTA1Q9NP79 TEX30-203ENST00000376022 828 ntTSL 2 BASIC17.71■□□□□ 0.43
VTA1Q9NP79 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VTA1Q9NP79 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
VTA1Q9NP79 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC17.71■□□□□ 0.43
VTA1Q9NP79 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
VTA1Q9NP79 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VTA1Q9NP79 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC17.71■□□□□ 0.43
VTA1Q9NP79 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC17.71■□□□□ 0.43
VTA1Q9NP79 ATF5-205ENST00000600336 682 ntTSL 2 BASIC17.71■□□□□ 0.43
VTA1Q9NP79 AC093813.1-201ENST00000605066 256 ntBASIC17.71■□□□□ 0.43
VTA1Q9NP79 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VTA1Q9NP79 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
VTA1Q9NP79 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VTA1Q9NP79 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
VTA1Q9NP79 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.71■□□□□ 0.43
VTA1Q9NP79 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VTA1Q9NP79 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VTA1Q9NP79 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VTA1Q9NP79 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC17.71■□□□□ 0.43
VTA1Q9NP79 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
VTA1Q9NP79 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VTA1Q9NP79 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
VTA1Q9NP79 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VTA1Q9NP79 DRD5P1-201ENST00000456605 1438 ntBASIC17.71■□□□□ 0.43
VTA1Q9NP79 TUBB1P2-201ENST00000422712 1306 ntBASIC17.71■□□□□ 0.42
VTA1Q9NP79 TUBB1P1-201ENST00000503144 1300 ntBASIC17.71■□□□□ 0.42
VTA1Q9NP79 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.42
VTA1Q9NP79 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
VTA1Q9NP79 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
VTA1Q9NP79 TK1-203ENST00000588734 1681 ntTSL 2 BASIC17.71■□□□□ 0.42
VTA1Q9NP79 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 AGER-206ENST00000375070 1463 ntTSL 5 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 ACKR1-201ENST00000368121 1240 ntBASIC17.7■□□□□ 0.42
VTA1Q9NP79 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 ACTBP11-201ENST00000436287 1126 ntBASIC17.7■□□□□ 0.42
VTA1Q9NP79 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 FTH1P14-201ENST00000482930 551 ntBASIC17.7■□□□□ 0.42
VTA1Q9NP79 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 PACS1-203ENST00000524815 628 ntTSL 4 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VTA1Q9NP79 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 MIR4525-201ENST00000580000 75 ntBASIC17.7■□□□□ 0.42
VTA1Q9NP79 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 HADH-212ENST00000638621 741 ntTSL 5 BASIC17.7■□□□□ 0.42
VTA1Q9NP79 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms