Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 HNRNPA3P5-201ENST00000455201 833 ntBASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
TRIM39Q9HCM9 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 FO393414.2-201ENST00000405153 598 ntBASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 TSSK5P-201ENST00000423978 907 ntBASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 SERBP1P3-201ENST00000459980 809 ntBASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 INGX-202ENST00000489074 768 ntBASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 SPCS2P1-201ENST00000561636 679 ntBASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 AL096865.1-201ENST00000606796 927 ntBASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM39Q9HCM9 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC15.86■□□□□ 0.13
TRIM39Q9HCM9 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms