Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 AC098859.1-201ENST00000502915 1238 ntBASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 AC112191.1-201ENST00000523689 701 ntBASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 SPTSSB-204ENST00000617024 1292 ntBASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 AL691432.1-201ENST00000596308 1422 ntBASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 AC105233.2-201ENST00000523697 349 ntBASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 AF228730.5-201ENST00000530288 346 ntBASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 AL135744.1-201ENST00000565098 629 ntBASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 AC140113.2-201ENST00000604370 208 ntBASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ATG4AQ8WYN0 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 AL355306.1-201ENST00000415580 579 ntBASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.56■□□□□ 0.24
ATG4AQ8WYN0 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms