Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TUBBP5-203ENST00000508529 1334 ntBASIC21.76■■□□□ 1.07
MSH6P52701 AC008132.1-202ENST00000342005 1389 ntBASIC21.76■■□□□ 1.07
MSH6P52701 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC21.76■■□□□ 1.07
MSH6P52701 AL592424.1-201ENST00000563624 1536 ntBASIC21.76■■□□□ 1.07
MSH6P52701 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH6P52701 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC21.76■■□□□ 1.07
MSH6P52701 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
MSH6P52701 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
MSH6P52701 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH6P52701 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH6P52701 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MSH6P52701 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH6P52701 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MSH6P52701 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH6P52701 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH6P52701 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC21.76■■□□□ 1.07
MSH6P52701 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MSH6P52701 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH6P52701 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH6P52701 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
MSH6P52701 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
MSH6P52701 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC21.75■■□□□ 1.07
MSH6P52701 UFM1-202ENST00000379649 846 ntTSL 4 BASIC21.75■■□□□ 1.07
MSH6P52701 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC21.75■■□□□ 1.07
MSH6P52701 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
MSH6P52701 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
MSH6P52701 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC21.75■■□□□ 1.07
MSH6P52701 GAPDHP40-201ENST00000505218 1006 ntBASIC21.75■■□□□ 1.07
MSH6P52701 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC21.75■■□□□ 1.07
MSH6P52701 AC022217.1-201ENST00000521069 738 ntBASIC21.75■■□□□ 1.07
MSH6P52701 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH6P52701 RN7SL774P-201ENST00000577467 290 ntBASIC21.75■■□□□ 1.07
MSH6P52701 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH6P52701 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC21.75■■□□□ 1.07
MSH6P52701 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC21.75■■□□□ 1.07
MSH6P52701 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH6P52701 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH6P52701 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC21.75■■□□□ 1.07
MSH6P52701 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH6P52701 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH6P52701 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH6P52701 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC21.75■■□□□ 1.07
MSH6P52701 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
MSH6P52701 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH6P52701 SMS-201ENST00000379404 1174 ntTSL 3 BASIC21.74■■□□□ 1.07
MSH6P52701 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC21.74■■□□□ 1.07
MSH6P52701 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC21.74■■□□□ 1.07
MSH6P52701 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC21.74■■□□□ 1.07
MSH6P52701 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
MSH6P52701 RNF41-210ENST00000552244 716 ntTSL 3 BASIC21.74■■□□□ 1.07
MSH6P52701 CMC2-214ENST00000565925 640 ntTSL 5 BASIC21.74■■□□□ 1.07
MSH6P52701 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC21.74■■□□□ 1.07
MSH6P52701 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC21.74■■□□□ 1.07
MSH6P52701 AL645939.5-201ENST00000606834 243 ntBASIC21.74■■□□□ 1.07
MSH6P52701 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MSH6P52701 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH6P52701 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
MSH6P52701 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MSH6P52701 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC21.74■■□□□ 1.07
MSH6P52701 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH6P52701 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MSH6P52701 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MSH6P52701 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH6P52701 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
MSH6P52701 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH6P52701 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC21.74■■□□□ 1.07
MSH6P52701 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC21.74■■□□□ 1.07
MSH6P52701 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MSH6P52701 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC21.74■■□□□ 1.07
MSH6P52701 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC21.74■■□□□ 1.07
MSH6P52701 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MSH6P52701 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC21.74■■□□□ 1.07
MSH6P52701 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC21.74■■□□□ 1.07
MSH6P52701 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSH6P52701 AC106820.2-201ENST00000563775 3264 ntBASIC21.73■■□□□ 1.07
MSH6P52701 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSH6P52701 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
MSH6P52701 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
MSH6P52701 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
MSH6P52701 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
MSH6P52701 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSH6P52701 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC21.73■■□□□ 1.07
MSH6P52701 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
MSH6P52701 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSH6P52701 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSH6P52701 AP001094.4-201ENST00000579008 2176 ntBASIC21.73■■□□□ 1.07
MSH6P52701 TPM3P8-201ENST00000330554 643 ntBASIC21.73■■□□□ 1.07
MSH6P52701 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC21.73■■□□□ 1.07
MSH6P52701 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSH6P52701 CRCP-204ENST00000398684 492 ntTSL 2 BASIC21.73■■□□□ 1.07
MSH6P52701 POU5F1P6-201ENST00000466990 990 ntBASIC21.73■■□□□ 1.07
MSH6P52701 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC21.73■■□□□ 1.07
MSH6P52701 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
MSH6P52701 BX539320.1-201ENST00000623759 877 ntBASIC21.73■■□□□ 1.07
MSH6P52701 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC21.73■■□□□ 1.07
MSH6P52701 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
MSH6P52701 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSH6P52701 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH6P52701 AC009053.2-201ENST00000563701 2365 ntBASIC21.72■■□□□ 1.07
MSH6P52701 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms