Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.41■□□□□ 0.54
SCN4AP35499 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC18.41■□□□□ 0.54
SCN4AP35499 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.41■□□□□ 0.54
SCN4AP35499 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC18.41■□□□□ 0.54
SCN4AP35499 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.41■□□□□ 0.54
SCN4AP35499 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.41■□□□□ 0.54
SCN4AP35499 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SCN4AP35499 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SCN4AP35499 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC18.41■□□□□ 0.54
SCN4AP35499 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC18.41■□□□□ 0.54
SCN4AP35499 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC18.41■□□□□ 0.54
SCN4AP35499 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.41■□□□□ 0.54
SCN4AP35499 AC020922.3-201ENST00000595064 547 ntBASIC18.41■□□□□ 0.54
SCN4AP35499 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC18.41■□□□□ 0.54
SCN4AP35499 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC18.41■□□□□ 0.54
SCN4AP35499 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN4AP35499 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
SCN4AP35499 AL133373.2-201ENST00000623187 2828 ntBASIC18.4■□□□□ 0.54
SCN4AP35499 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SCN4AP35499 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SCN4AP35499 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
SCN4AP35499 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SCN4AP35499 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.4■□□□□ 0.54
SCN4AP35499 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SCN4AP35499 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
SCN4AP35499 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SCN4AP35499 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SCN4AP35499 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC18.4■□□□□ 0.54
SCN4AP35499 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC18.4■□□□□ 0.54
SCN4AP35499 AL136295.7-201ENST00000619226 1200 ntBASIC18.4■□□□□ 0.54
SCN4AP35499 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SCN4AP35499 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
SCN4AP35499 AL157791.1-201ENST00000553667 1699 ntBASIC18.4■□□□□ 0.54
SCN4AP35499 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SCN4AP35499 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SCN4AP35499 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SCN4AP35499 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SCN4AP35499 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
SCN4AP35499 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SCN4AP35499 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.39■□□□□ 0.54
SCN4AP35499 LSM5-207ENST00000410044 687 ntTSL 3 BASIC18.39■□□□□ 0.54
SCN4AP35499 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC18.39■□□□□ 0.54
SCN4AP35499 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC18.39■□□□□ 0.54
SCN4AP35499 RPL18P13-201ENST00000478088 569 ntBASIC18.39■□□□□ 0.54
SCN4AP35499 IGHV3-37-201ENST00000518544 340 ntBASIC18.39■□□□□ 0.54
SCN4AP35499 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SCN4AP35499 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC18.39■□□□□ 0.54
SCN4AP35499 AC051619.9-201ENST00000623237 597 ntBASIC18.39■□□□□ 0.54
SCN4AP35499 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC18.39■□□□□ 0.54
SCN4AP35499 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SCN4AP35499 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
SCN4AP35499 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SCN4AP35499 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.39■□□□□ 0.53
SCN4AP35499 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SCN4AP35499 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SCN4AP35499 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SCN4AP35499 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SCN4AP35499 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.39■□□□□ 0.53
SCN4AP35499 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SCN4AP35499 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SCN4AP35499 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SCN4AP35499 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.39■□□□□ 0.53
SCN4AP35499 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SCN4AP35499 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SCN4AP35499 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SCN4AP35499 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SCN4AP35499 AC078991.1-201ENST00000437297 610 ntBASIC18.39■□□□□ 0.53
SCN4AP35499 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC18.39■□□□□ 0.53
SCN4AP35499 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.39■□□□□ 0.53
SCN4AP35499 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC18.39■□□□□ 0.53
SCN4AP35499 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
SCN4AP35499 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.39■□□□□ 0.53
SCN4AP35499 RTN3P1-201ENST00000536295 711 ntBASIC18.39■□□□□ 0.53
SCN4AP35499 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC18.39■□□□□ 0.53
SCN4AP35499 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC18.39■□□□□ 0.53
SCN4AP35499 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
SCN4AP35499 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SCN4AP35499 PP12613-201ENST00000424958 2230 ntBASIC18.38■□□□□ 0.53
SCN4AP35499 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SCN4AP35499 AC025271.4-201ENST00000621477 1726 ntBASIC18.38■□□□□ 0.53
SCN4AP35499 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.38■□□□□ 0.53
SCN4AP35499 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC18.38■□□□□ 0.53
SCN4AP35499 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SCN4AP35499 NPPA-201ENST00000376476 728 ntTSL 3 BASIC18.38■□□□□ 0.53
SCN4AP35499 AL645937.2-201ENST00000396808 931 ntBASIC18.38■□□□□ 0.53
SCN4AP35499 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms