Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SDC1P18827 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.22■□□□□ 0.03
SDC1P18827 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.22■□□□□ 0.03
SDC1P18827 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.22■□□□□ 0.03
SDC1P18827 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.22■□□□□ 0.03
SDC1P18827 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.22■□□□□ 0.03
SDC1P18827 TIMM8BP1-201ENST00000452384 211 ntBASIC15.22■□□□□ 0.03
SDC1P18827 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.22■□□□□ 0.03
SDC1P18827 IGHV3-62-201ENST00000520057 340 ntBASIC15.22■□□□□ 0.03
SDC1P18827 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.22■□□□□ 0.03
SDC1P18827 KRT8P23-201ENST00000560090 1207 ntBASIC15.22■□□□□ 0.03
SDC1P18827 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.22■□□□□ 0.03
SDC1P18827 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.22■□□□□ 0.03
SDC1P18827 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.22■□□□□ 0.03
SDC1P18827 C20orf181-201ENST00000623918 480 ntBASIC15.22■□□□□ 0.03
SDC1P18827 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.22■□□□□ 0.03
SDC1P18827 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SDC1P18827 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SDC1P18827 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SDC1P18827 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SDC1P18827 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.22■□□□□ 0.03
SDC1P18827 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SDC1P18827 AP002414.2-201ENST00000591780 3365 ntBASIC15.22■□□□□ 0.03
SDC1P18827 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SDC1P18827 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SDC1P18827 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SDC1P18827 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.22■□□□□ 0.03
SDC1P18827 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
SDC1P18827 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SDC1P18827 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
SDC1P18827 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SDC1P18827 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
SDC1P18827 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.21■□□□□ 0.03
SDC1P18827 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
SDC1P18827 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.21■□□□□ 0.03
SDC1P18827 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.21■□□□□ 0.03
SDC1P18827 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.21■□□□□ 0.03
SDC1P18827 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.21■□□□□ 0.03
SDC1P18827 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SDC1P18827 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.21■□□□□ 0.03
SDC1P18827 AC004832.2-201ENST00000426397 482 ntBASIC15.21■□□□□ 0.03
SDC1P18827 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.21■□□□□ 0.03
SDC1P18827 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SDC1P18827 POLD2P1-201ENST00000511220 997 ntBASIC15.21■□□□□ 0.03
SDC1P18827 KRT18P58-201ENST00000527480 1120 ntBASIC15.21■□□□□ 0.03
SDC1P18827 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.21■□□□□ 0.03
SDC1P18827 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.21■□□□□ 0.03
SDC1P18827 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.21■□□□□ 0.03
SDC1P18827 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.21■□□□□ 0.03
SDC1P18827 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.21■□□□□ 0.03
SDC1P18827 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.21■□□□□ 0.03
SDC1P18827 AC112693.3-201ENST00000624819 1983 ntBASIC15.21■□□□□ 0.03
SDC1P18827 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.21■□□□□ 0.03
SDC1P18827 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.21■□□□□ 0.03
SDC1P18827 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
SDC1P18827 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SDC1P18827 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.21■□□□□ 0.02
SDC1P18827 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SDC1P18827 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.21■□□□□ 0.02
SDC1P18827 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SDC1P18827 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SDC1P18827 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SDC1P18827 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDC1P18827 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.2■□□□□ 0.02
SDC1P18827 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SDC1P18827 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDC1P18827 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SDC1P18827 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDC1P18827 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SDC1P18827 KRT8P37-201ENST00000451609 1420 ntBASIC15.2■□□□□ 0.02
SDC1P18827 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.2■□□□□ 0.02
SDC1P18827 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SDC1P18827 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
SDC1P18827 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SDC1P18827 MIR574-201ENST00000385209 96 ntBASIC15.2■□□□□ 0.02
SDC1P18827 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SDC1P18827 EEF1DP4-201ENST00000446006 880 ntBASIC15.2■□□□□ 0.02
SDC1P18827 ACTG1P14-201ENST00000446382 1122 ntBASIC15.2■□□□□ 0.02
SDC1P18827 AL139010.1-201ENST00000454878 894 ntBASIC15.2■□□□□ 0.02
SDC1P18827 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.2■□□□□ 0.02
SDC1P18827 ALG1L5P-201ENST00000482043 771 ntBASIC15.2■□□□□ 0.02
SDC1P18827 AC069335.1-201ENST00000489972 472 ntBASIC15.2■□□□□ 0.02
SDC1P18827 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms