Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PTCD3Q96EY7 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PTCD3Q96EY7 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
PTCD3Q96EY7 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
PTCD3Q96EY7 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
PTCD3Q96EY7 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
PTCD3Q96EY7 RP9P-202ENST00000450133 1212 ntBASIC23.26■■□□□ 1.31
PTCD3Q96EY7 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC23.26■■□□□ 1.31
PTCD3Q96EY7 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC23.26■■□□□ 1.31
PTCD3Q96EY7 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC23.26■■□□□ 1.31
PTCD3Q96EY7 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.26■■□□□ 1.31
PTCD3Q96EY7 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PTCD3Q96EY7 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
PTCD3Q96EY7 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PTCD3Q96EY7 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PTCD3Q96EY7 AC007029.1-201ENST00000604183 313 ntBASIC23.25■■□□□ 1.31
PTCD3Q96EY7 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PTCD3Q96EY7 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PTCD3Q96EY7 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PTCD3Q96EY7 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.24■■□□□ 1.31
PTCD3Q96EY7 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PTCD3Q96EY7 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PTCD3Q96EY7 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PTCD3Q96EY7 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PTCD3Q96EY7 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
PTCD3Q96EY7 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PTCD3Q96EY7 DUSP8P5-201ENST00000422884 1815 ntBASIC23.24■■□□□ 1.31
PTCD3Q96EY7 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PTCD3Q96EY7 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.23■■□□□ 1.31
PTCD3Q96EY7 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PTCD3Q96EY7 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PTCD3Q96EY7 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PTCD3Q96EY7 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PTCD3Q96EY7 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PTCD3Q96EY7 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PTCD3Q96EY7 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.23■■□□□ 1.31
PTCD3Q96EY7 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC23.23■■□□□ 1.31
PTCD3Q96EY7 CLDN5-201ENST00000403084 2357 ntBASIC23.23■■□□□ 1.31
PTCD3Q96EY7 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
PTCD3Q96EY7 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PTCD3Q96EY7 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PTCD3Q96EY7 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC23.23■■□□□ 1.31
PTCD3Q96EY7 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PTCD3Q96EY7 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
PTCD3Q96EY7 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.22■■□□□ 1.31
PTCD3Q96EY7 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC23.22■■□□□ 1.31
PTCD3Q96EY7 AC093536.1-201ENST00000569153 554 ntBASIC23.22■■□□□ 1.31
PTCD3Q96EY7 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
PTCD3Q96EY7 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
PTCD3Q96EY7 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PTCD3Q96EY7 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PTCD3Q96EY7 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
PTCD3Q96EY7 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC23.21■■□□□ 1.31
PTCD3Q96EY7 RNF126P1-201ENST00000567452 1320 ntBASIC23.21■■□□□ 1.31
PTCD3Q96EY7 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PTCD3Q96EY7 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC23.21■■□□□ 1.31
PTCD3Q96EY7 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PTCD3Q96EY7 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
PTCD3Q96EY7 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
PTCD3Q96EY7 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PTCD3Q96EY7 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PTCD3Q96EY7 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC23.2■■□□□ 1.3
PTCD3Q96EY7 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
PTCD3Q96EY7 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PTCD3Q96EY7 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.19■■□□□ 1.3
PTCD3Q96EY7 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
PTCD3Q96EY7 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PTCD3Q96EY7 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
PTCD3Q96EY7 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
PTCD3Q96EY7 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC23.19■■□□□ 1.3
PTCD3Q96EY7 GFER-205ENST00000569451 517 ntTSL 5 BASIC23.19■■□□□ 1.3
PTCD3Q96EY7 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.19■■□□□ 1.3
PTCD3Q96EY7 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PTCD3Q96EY7 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
PTCD3Q96EY7 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PTCD3Q96EY7 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PTCD3Q96EY7 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PTCD3Q96EY7 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PTCD3Q96EY7 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PTCD3Q96EY7 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PTCD3Q96EY7 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
PTCD3Q96EY7 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PTCD3Q96EY7 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
PTCD3Q96EY7 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PTCD3Q96EY7 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.16■■□□□ 1.3
PTCD3Q96EY7 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
PTCD3Q96EY7 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
PTCD3Q96EY7 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PTCD3Q96EY7 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PTCD3Q96EY7 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
PTCD3Q96EY7 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC23.16■■□□□ 1.3
PTCD3Q96EY7 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
PTCD3Q96EY7 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
PTCD3Q96EY7 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
PTCD3Q96EY7 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTCD3Q96EY7 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTCD3Q96EY7 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
PTCD3Q96EY7 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC23.15■■□□□ 1.3
PTCD3Q96EY7 ME2-208ENST00000638937 2471 ntTSL 5 BASIC23.15■■□□□ 1.3
PTCD3Q96EY7 AC141586.4-201ENST00000624558 1573 ntBASIC23.14■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms