Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CLRN3Q8NCR9 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLRN3Q8NCR9 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLRN3Q8NCR9 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CLRN3Q8NCR9 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.76■□□□□ 0.59
CLRN3Q8NCR9 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLRN3Q8NCR9 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.76■□□□□ 0.59
CLRN3Q8NCR9 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLRN3Q8NCR9 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC18.76■□□□□ 0.59
CLRN3Q8NCR9 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CLRN3Q8NCR9 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLRN3Q8NCR9 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLRN3Q8NCR9 LINC00526-201ENST00000581067 1875 ntBASIC18.75■□□□□ 0.59
CLRN3Q8NCR9 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLRN3Q8NCR9 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLRN3Q8NCR9 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC18.75■□□□□ 0.59
CLRN3Q8NCR9 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.75■□□□□ 0.59
CLRN3Q8NCR9 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLRN3Q8NCR9 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
CLRN3Q8NCR9 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLRN3Q8NCR9 AC073130.3-201ENST00000624389 2278 ntBASIC18.75■□□□□ 0.59
CLRN3Q8NCR9 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLRN3Q8NCR9 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLRN3Q8NCR9 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
CLRN3Q8NCR9 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLRN3Q8NCR9 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLRN3Q8NCR9 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CLRN3Q8NCR9 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC18.74■□□□□ 0.59
CLRN3Q8NCR9 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CLRN3Q8NCR9 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CLRN3Q8NCR9 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CLRN3Q8NCR9 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CLRN3Q8NCR9 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
CLRN3Q8NCR9 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLRN3Q8NCR9 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CLRN3Q8NCR9 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLRN3Q8NCR9 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.73■□□□□ 0.59
CLRN3Q8NCR9 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
CLRN3Q8NCR9 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
CLRN3Q8NCR9 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CLRN3Q8NCR9 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
CLRN3Q8NCR9 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLRN3Q8NCR9 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CLRN3Q8NCR9 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.73■□□□□ 0.59
CLRN3Q8NCR9 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.73■□□□□ 0.59
CLRN3Q8NCR9 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLRN3Q8NCR9 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLRN3Q8NCR9 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLRN3Q8NCR9 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLRN3Q8NCR9 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLRN3Q8NCR9 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CLRN3Q8NCR9 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CLRN3Q8NCR9 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC18.72■□□□□ 0.59
CLRN3Q8NCR9 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLRN3Q8NCR9 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLRN3Q8NCR9 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC18.72■□□□□ 0.59
CLRN3Q8NCR9 AC141586.4-201ENST00000624558 1573 ntBASIC18.72■□□□□ 0.59
CLRN3Q8NCR9 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLRN3Q8NCR9 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLRN3Q8NCR9 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLRN3Q8NCR9 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLRN3Q8NCR9 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.71■□□□□ 0.59
CLRN3Q8NCR9 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
CLRN3Q8NCR9 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC18.71■□□□□ 0.59
CLRN3Q8NCR9 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLRN3Q8NCR9 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC18.7■□□□□ 0.58
CLRN3Q8NCR9 AP002365.1-201ENST00000603448 772 ntBASIC18.7■□□□□ 0.58
CLRN3Q8NCR9 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLRN3Q8NCR9 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.7■□□□□ 0.58
CLRN3Q8NCR9 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLRN3Q8NCR9 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLRN3Q8NCR9 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLRN3Q8NCR9 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC18.69■□□□□ 0.58
CLRN3Q8NCR9 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLRN3Q8NCR9 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLRN3Q8NCR9 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLRN3Q8NCR9 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLRN3Q8NCR9 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLRN3Q8NCR9 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CLRN3Q8NCR9 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN3Q8NCR9 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN3Q8NCR9 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN3Q8NCR9 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN3Q8NCR9 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN3Q8NCR9 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.68■□□□□ 0.58
CLRN3Q8NCR9 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN3Q8NCR9 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN3Q8NCR9 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN3Q8NCR9 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLRN3Q8NCR9 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC18.67■□□□□ 0.58
CLRN3Q8NCR9 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLRN3Q8NCR9 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.67■□□□□ 0.58
CLRN3Q8NCR9 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC18.67■□□□□ 0.58
CLRN3Q8NCR9 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLRN3Q8NCR9 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLRN3Q8NCR9 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLRN3Q8NCR9 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLRN3Q8NCR9 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLRN3Q8NCR9 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CLRN3Q8NCR9 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms