Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
SHOX2O60902 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC23.65■■□□□ 1.38
SHOX2O60902 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SHOX2O60902 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC23.65■■□□□ 1.38
SHOX2O60902 WWC2-AS2-201ENST00000578387 2183 ntBASIC23.65■■□□□ 1.38
SHOX2O60902 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SHOX2O60902 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC23.65■■□□□ 1.38
SHOX2O60902 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
SHOX2O60902 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SHOX2O60902 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
SHOX2O60902 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC23.64■■□□□ 1.38
SHOX2O60902 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC23.64■■□□□ 1.38
SHOX2O60902 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC23.64■■□□□ 1.38
SHOX2O60902 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
SHOX2O60902 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SHOX2O60902 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC23.64■■□□□ 1.37
SHOX2O60902 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.64■■□□□ 1.37
SHOX2O60902 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
SHOX2O60902 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.64■■□□□ 1.37
SHOX2O60902 AC110285.7-201ENST00000624417 1536 ntBASIC23.64■■□□□ 1.37
SHOX2O60902 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SHOX2O60902 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC23.63■■□□□ 1.37
SHOX2O60902 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
SHOX2O60902 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SHOX2O60902 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SHOX2O60902 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SHOX2O60902 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
SHOX2O60902 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.62■■□□□ 1.37
SHOX2O60902 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SHOX2O60902 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
SHOX2O60902 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
SHOX2O60902 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
SHOX2O60902 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC23.62■■□□□ 1.37
SHOX2O60902 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SHOX2O60902 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.61■■□□□ 1.37
SHOX2O60902 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
SHOX2O60902 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.61■■□□□ 1.37
SHOX2O60902 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
SHOX2O60902 MIR762-201ENST00000390236 83 ntBASIC23.61■■□□□ 1.37
SHOX2O60902 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC23.61■■□□□ 1.37
SHOX2O60902 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
SHOX2O60902 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC23.61■■□□□ 1.37
SHOX2O60902 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC23.6■■□□□ 1.37
SHOX2O60902 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SHOX2O60902 MED17-221ENST00000639724 2317 ntTSL 5 BASIC23.6■■□□□ 1.37
SHOX2O60902 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SHOX2O60902 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC23.6■■□□□ 1.37
SHOX2O60902 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC23.6■■□□□ 1.37
SHOX2O60902 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC23.6■■□□□ 1.37
SHOX2O60902 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
SHOX2O60902 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC23.6■■□□□ 1.37
SHOX2O60902 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
SHOX2O60902 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SHOX2O60902 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SHOX2O60902 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
SHOX2O60902 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SHOX2O60902 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC23.59■■□□□ 1.37
SHOX2O60902 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SHOX2O60902 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC23.59■■□□□ 1.37
SHOX2O60902 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
SHOX2O60902 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SHOX2O60902 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
SHOX2O60902 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
SHOX2O60902 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC23.58■■□□□ 1.37
SHOX2O60902 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SHOX2O60902 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
SHOX2O60902 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
SHOX2O60902 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
SHOX2O60902 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SHOX2O60902 LSR-203ENST00000360798 1963 ntTSL 2 BASIC23.58■■□□□ 1.36
SHOX2O60902 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SHOX2O60902 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SHOX2O60902 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
SHOX2O60902 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SHOX2O60902 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SHOX2O60902 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
SHOX2O60902 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
SHOX2O60902 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.56■■□□□ 1.36
SHOX2O60902 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SHOX2O60902 SLC25A24-204ENST00000569674 2357 ntBASIC23.56■■□□□ 1.36
SHOX2O60902 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC23.56■■□□□ 1.36
SHOX2O60902 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
SHOX2O60902 GUSBP5-202ENST00000510805 1989 ntBASIC23.56■■□□□ 1.36
SHOX2O60902 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
SHOX2O60902 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
SHOX2O60902 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SHOX2O60902 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC23.55■■□□□ 1.36
SHOX2O60902 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC23.55■■□□□ 1.36
SHOX2O60902 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC23.55■■□□□ 1.36
SHOX2O60902 ECEL1P1-201ENST00000373592 1742 ntBASIC23.55■■□□□ 1.36
SHOX2O60902 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
SHOX2O60902 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
SHOX2O60902 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC23.55■■□□□ 1.36
SHOX2O60902 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
SHOX2O60902 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
SHOX2O60902 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC23.55■■□□□ 1.36
SHOX2O60902 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC23.54■■□□□ 1.36
SHOX2O60902 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
SHOX2O60902 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC23.54■■□□□ 1.36
SHOX2O60902 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms