Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A5A8TX70 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A5A8TX70 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A5A8TX70 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC18.68■□□□□ 0.58
COL6A5A8TX70 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.68■□□□□ 0.58
COL6A5A8TX70 DUX4L19-201ENST00000557448 1267 ntBASIC18.68■□□□□ 0.58
COL6A5A8TX70 GAK-223ENST00000628912 497 ntTSL 5 BASIC18.68■□□□□ 0.58
COL6A5A8TX70 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A5A8TX70 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A5A8TX70 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC18.68■□□□□ 0.58
COL6A5A8TX70 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.68■□□□□ 0.58
COL6A5A8TX70 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
COL6A5A8TX70 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
COL6A5A8TX70 AC004911.1-201ENST00000416316 871 ntBASIC18.68■□□□□ 0.58
COL6A5A8TX70 AP002414.2-202ENST00000590929 1450 ntBASIC18.67■□□□□ 0.58
COL6A5A8TX70 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.67■□□□□ 0.58
COL6A5A8TX70 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC18.67■□□□□ 0.58
COL6A5A8TX70 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
COL6A5A8TX70 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.67■□□□□ 0.58
COL6A5A8TX70 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.67■□□□□ 0.58
COL6A5A8TX70 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A5A8TX70 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A5A8TX70 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.66■□□□□ 0.58
COL6A5A8TX70 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
COL6A5A8TX70 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC18.66■□□□□ 0.58
COL6A5A8TX70 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A5A8TX70 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC18.66■□□□□ 0.58
COL6A5A8TX70 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
COL6A5A8TX70 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A5A8TX70 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.66■□□□□ 0.58
COL6A5A8TX70 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
COL6A5A8TX70 RAP2CP1-201ENST00000605103 478 ntBASIC18.65■□□□□ 0.58
COL6A5A8TX70 SNX5-217ENST00000606557 1087 ntBASIC18.65■□□□□ 0.58
COL6A5A8TX70 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
COL6A5A8TX70 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
COL6A5A8TX70 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A5A8TX70 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A5A8TX70 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.65■□□□□ 0.58
COL6A5A8TX70 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.65■□□□□ 0.58
COL6A5A8TX70 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
COL6A5A8TX70 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC18.65■□□□□ 0.58
COL6A5A8TX70 AC004448.1-201ENST00000458332 883 ntBASIC18.64■□□□□ 0.57
COL6A5A8TX70 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.64■□□□□ 0.57
COL6A5A8TX70 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A5A8TX70 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC18.64■□□□□ 0.57
COL6A5A8TX70 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
COL6A5A8TX70 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A5A8TX70 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A5A8TX70 ST7-AS1-201ENST00000456775 1889 ntBASIC18.63■□□□□ 0.57
COL6A5A8TX70 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.63■□□□□ 0.57
COL6A5A8TX70 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
COL6A5A8TX70 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A5A8TX70 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A5A8TX70 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A5A8TX70 SERBP1P1-201ENST00000396021 1160 ntBASIC18.63■□□□□ 0.57
COL6A5A8TX70 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC18.63■□□□□ 0.57
COL6A5A8TX70 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.63■□□□□ 0.57
COL6A5A8TX70 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A5A8TX70 YBX1P1-201ENST00000445822 960 ntBASIC18.63■□□□□ 0.57
COL6A5A8TX70 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.63■□□□□ 0.57
COL6A5A8TX70 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A5A8TX70 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.62■□□□□ 0.57
COL6A5A8TX70 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A5A8TX70 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
COL6A5A8TX70 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A5A8TX70 AC011298.3-201ENST00000615796 283 ntBASIC18.62■□□□□ 0.57
COL6A5A8TX70 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
COL6A5A8TX70 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
COL6A5A8TX70 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
COL6A5A8TX70 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A5A8TX70 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A5A8TX70 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A5A8TX70 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.61■□□□□ 0.57
COL6A5A8TX70 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC18.61■□□□□ 0.57
COL6A5A8TX70 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A5A8TX70 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.6■□□□□ 0.57
COL6A5A8TX70 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC18.6■□□□□ 0.57
COL6A5A8TX70 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A5A8TX70 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
COL6A5A8TX70 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A5A8TX70 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC18.59■□□□□ 0.57
COL6A5A8TX70 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC18.59■□□□□ 0.57
COL6A5A8TX70 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A5A8TX70 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A5A8TX70 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A5A8TX70 TMEM191A-211ENST00000637163 1067 ntBASIC18.59■□□□□ 0.57
COL6A5A8TX70 AL139393.2-201ENST00000608721 2025 ntBASIC18.59■□□□□ 0.57
COL6A5A8TX70 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
COL6A5A8TX70 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A5A8TX70 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A5A8TX70 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL6A5A8TX70 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.58■□□□□ 0.57
COL6A5A8TX70 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
COL6A5A8TX70 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC18.58■□□□□ 0.56
COL6A5A8TX70 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.58■□□□□ 0.56
COL6A5A8TX70 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL6A5A8TX70 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.58■□□□□ 0.56
COL6A5A8TX70 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A5A8TX70 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A5A8TX70 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms