Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav4-3A0A0B4J1K1 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav4-3A0A0B4J1K1 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav4-3A0A0B4J1K1 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Trav4-3A0A0B4J1K1 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav4-3A0A0B4J1K1 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav4-3A0A0B4J1K1 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
Trav4-3A0A0B4J1K1 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav4-3A0A0B4J1K1 AC153504.1-201ENSMUST00000218379 2290 ntBASIC18.47■□□□□ 0.55
Trav4-3A0A0B4J1K1 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
Trav4-3A0A0B4J1K1 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav4-3A0A0B4J1K1 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trav4-3A0A0B4J1K1 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav4-3A0A0B4J1K1 Gm24109-201ENSMUST00000175489 103 ntBASIC18.41■□□□□ 0.54
Trav4-3A0A0B4J1K1 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav4-3A0A0B4J1K1 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Trav4-3A0A0B4J1K1 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav4-3A0A0B4J1K1 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav4-3A0A0B4J1K1 Gm2415-204ENSMUST00000190235 2004 ntBASIC18.33■□□□□ 0.53
Trav4-3A0A0B4J1K1 Gm23366-201ENSMUST00000175022 89 ntBASIC18.31■□□□□ 0.52
Trav4-3A0A0B4J1K1 AC153911.1-202ENSMUST00000218534 1034 ntBASIC18.31■□□□□ 0.52
Trav4-3A0A0B4J1K1 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav4-3A0A0B4J1K1 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trav4-3A0A0B4J1K1 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav4-3A0A0B4J1K1 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
Trav4-3A0A0B4J1K1 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav4-3A0A0B4J1K1 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav4-3A0A0B4J1K1 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Trav4-3A0A0B4J1K1 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav4-3A0A0B4J1K1 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav4-3A0A0B4J1K1 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav4-3A0A0B4J1K1 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav4-3A0A0B4J1K1 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC18.21■□□□□ 0.51
Trav4-3A0A0B4J1K1 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC18.21■□□□□ 0.5
Trav4-3A0A0B4J1K1 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav4-3A0A0B4J1K1 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trav4-3A0A0B4J1K1 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav4-3A0A0B4J1K1 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC18.17■□□□□ 0.5
Trav4-3A0A0B4J1K1 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trav4-3A0A0B4J1K1 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav4-3A0A0B4J1K1 Gm6658-202ENSMUST00000209493 1885 ntBASIC18.16■□□□□ 0.5
Trav4-3A0A0B4J1K1 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav4-3A0A0B4J1K1 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav4-3A0A0B4J1K1 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav4-3A0A0B4J1K1 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav4-3A0A0B4J1K1 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav4-3A0A0B4J1K1 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav4-3A0A0B4J1K1 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav4-3A0A0B4J1K1 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trav4-3A0A0B4J1K1 Gm9905-201ENSMUST00000065740 1845 ntBASIC18.09■□□□□ 0.49
Trav4-3A0A0B4J1K1 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trav4-3A0A0B4J1K1 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC18.07■□□□□ 0.48
Trav4-3A0A0B4J1K1 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trav4-3A0A0B4J1K1 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav4-3A0A0B4J1K1 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC18.06■□□□□ 0.48
Trav4-3A0A0B4J1K1 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trav4-3A0A0B4J1K1 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trav4-3A0A0B4J1K1 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trav4-3A0A0B4J1K1 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav4-3A0A0B4J1K1 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav4-3A0A0B4J1K1 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav4-3A0A0B4J1K1 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC18■□□□□ 0.47
Trav4-3A0A0B4J1K1 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav4-3A0A0B4J1K1 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav4-3A0A0B4J1K1 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav4-3A0A0B4J1K1 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trav4-3A0A0B4J1K1 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
Trav4-3A0A0B4J1K1 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Trav4-3A0A0B4J1K1 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav4-3A0A0B4J1K1 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav4-3A0A0B4J1K1 Zxda-201ENSMUST00000117281 2621 ntBASIC17.91■□□□□ 0.46
Trav4-3A0A0B4J1K1 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trav4-3A0A0B4J1K1 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trav4-3A0A0B4J1K1 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trav4-3A0A0B4J1K1 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav4-3A0A0B4J1K1 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Trav4-3A0A0B4J1K1 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav4-3A0A0B4J1K1 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav4-3A0A0B4J1K1 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav4-3A0A0B4J1K1 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav4-3A0A0B4J1K1 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav4-3A0A0B4J1K1 Gm6206-201ENSMUST00000133472 2199 ntBASIC17.86■□□□□ 0.45
Trav4-3A0A0B4J1K1 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trav4-3A0A0B4J1K1 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trav4-3A0A0B4J1K1 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav4-3A0A0B4J1K1 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Trav4-3A0A0B4J1K1 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trav4-3A0A0B4J1K1 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Trav4-3A0A0B4J1K1 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav4-3A0A0B4J1K1 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav4-3A0A0B4J1K1 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav4-3A0A0B4J1K1 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav4-3A0A0B4J1K1 Zfp131-207ENSMUST00000224946 1783 ntBASIC17.79■□□□□ 0.44
Trav4-3A0A0B4J1K1 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trav4-3A0A0B4J1K1 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav4-3A0A0B4J1K1 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC17.77■□□□□ 0.44
Trav4-3A0A0B4J1K1 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trav4-3A0A0B4J1K1 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav4-3A0A0B4J1K1 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trav4-3A0A0B4J1K1 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms