Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 AL035456.1-201ENST00000456064 1369 ntBASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 AC109322.1-201ENST00000524499 1264 ntBASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 AC007967.4-201ENST00000614700 386 ntBASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 AC112504.1-201ENST00000623415 1841 ntBASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 TSPY26P-202ENST00000565928 3884 ntBASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SYNE3Q6ZMZ3 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 AC134407.2-201ENST00000625089 1978 ntBASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 AL139400.1-201ENST00000366220 510 ntBASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SYNE3Q6ZMZ3 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
SYNE3Q6ZMZ3 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC18.83■□□□□ 0.61
SYNE3Q6ZMZ3 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SYNE3Q6ZMZ3 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.83■□□□□ 0.61
SYNE3Q6ZMZ3 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.61
SYNE3Q6ZMZ3 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SYNE3Q6ZMZ3 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
SYNE3Q6ZMZ3 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.83■□□□□ 0.61
SYNE3Q6ZMZ3 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
SYNE3Q6ZMZ3 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SYNE3Q6ZMZ3 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.83■□□□□ 0.61
SYNE3Q6ZMZ3 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC18.83■□□□□ 0.61
SYNE3Q6ZMZ3 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SYNE3Q6ZMZ3 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SYNE3Q6ZMZ3 AC011477.6-201ENST00000604980 1927 ntBASIC18.83■□□□□ 0.6
SYNE3Q6ZMZ3 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
SYNE3Q6ZMZ3 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SYNE3Q6ZMZ3 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
SYNE3Q6ZMZ3 CNN2P2-201ENST00000443536 909 ntBASIC18.83■□□□□ 0.6
SYNE3Q6ZMZ3 CNN2P3-201ENST00000450201 906 ntBASIC18.83■□□□□ 0.6
SYNE3Q6ZMZ3 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.83■□□□□ 0.6
SYNE3Q6ZMZ3 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.83■□□□□ 0.6
SYNE3Q6ZMZ3 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
SYNE3Q6ZMZ3 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC18.83■□□□□ 0.6
SYNE3Q6ZMZ3 LITAF-210ENST00000571976 548 ntTSL 2 BASIC18.83■□□□□ 0.6
SYNE3Q6ZMZ3 LITAF-214ENST00000574703 486 ntTSL 2 BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms