Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC18.93■□□□□ 0.62
BRCA1P38398 AC011742.3-201ENST00000439053 820 ntBASIC18.93■□□□□ 0.62
BRCA1P38398 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC18.93■□□□□ 0.62
BRCA1P38398 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
BRCA1P38398 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
BRCA1P38398 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC18.93■□□□□ 0.62
BRCA1P38398 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC18.93■□□□□ 0.62
BRCA1P38398 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.93■□□□□ 0.62
BRCA1P38398 AP001065.2-201ENST00000617205 644 ntBASIC18.93■□□□□ 0.62
BRCA1P38398 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BRCA1P38398 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BRCA1P38398 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
BRCA1P38398 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC18.93■□□□□ 0.62
BRCA1P38398 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC18.93■□□□□ 0.62
BRCA1P38398 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
BRCA1P38398 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
BRCA1P38398 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
BRCA1P38398 KRT8P4-201ENST00000509735 1454 ntBASIC18.93■□□□□ 0.62
BRCA1P38398 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
BRCA1P38398 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
BRCA1P38398 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
BRCA1P38398 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.93■□□□□ 0.62
BRCA1P38398 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
BRCA1P38398 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRCA1P38398 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRCA1P38398 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.92■□□□□ 0.62
BRCA1P38398 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC18.92■□□□□ 0.62
BRCA1P38398 EID1-202ENST00000560490 584 ntTSL 3 BASIC18.92■□□□□ 0.62
BRCA1P38398 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC18.92■□□□□ 0.62
BRCA1P38398 AL353770.1-201ENST00000614915 403 ntBASIC18.92■□□□□ 0.62
BRCA1P38398 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRCA1P38398 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC18.92■□□□□ 0.62
BRCA1P38398 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRCA1P38398 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.92■□□□□ 0.62
BRCA1P38398 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRCA1P38398 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRCA1P38398 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
BRCA1P38398 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC18.92■□□□□ 0.62
BRCA1P38398 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC18.92■□□□□ 0.62
BRCA1P38398 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC18.92■□□□□ 0.62
BRCA1P38398 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
BRCA1P38398 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRCA1P38398 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRCA1P38398 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRCA1P38398 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
BRCA1P38398 RPL17P45-201ENST00000586289 509 ntBASIC18.92■□□□□ 0.62
BRCA1P38398 AC005357.2-202ENST00000590507 1060 ntBASIC18.92■□□□□ 0.62
BRCA1P38398 AC020922.3-201ENST00000595064 547 ntBASIC18.92■□□□□ 0.62
BRCA1P38398 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC18.92■□□□□ 0.62
BRCA1P38398 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC18.92■□□□□ 0.62
BRCA1P38398 UBALD1-205ENST00000590891 2641 ntBASIC18.92■□□□□ 0.62
BRCA1P38398 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
BRCA1P38398 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.91■□□□□ 0.62
BRCA1P38398 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
BRCA1P38398 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
BRCA1P38398 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRCA1P38398 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
BRCA1P38398 AL158070.2-201ENST00000623713 1621 ntBASIC18.91■□□□□ 0.62
BRCA1P38398 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRCA1P38398 AC018892.3-201ENST00000623986 2499 ntBASIC18.91■□□□□ 0.62
BRCA1P38398 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
BRCA1P38398 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRCA1P38398 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRCA1P38398 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.91■□□□□ 0.62
BRCA1P38398 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.91■□□□□ 0.62
BRCA1P38398 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
BRCA1P38398 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRCA1P38398 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRCA1P38398 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRCA1P38398 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC18.91■□□□□ 0.62
BRCA1P38398 AC073150.1-201ENST00000450406 1084 ntBASIC18.91■□□□□ 0.62
BRCA1P38398 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC18.91■□□□□ 0.62
BRCA1P38398 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC18.91■□□□□ 0.62
BRCA1P38398 MIR4754-201ENST00000582477 89 ntBASIC18.91■□□□□ 0.62
BRCA1P38398 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC18.91■□□□□ 0.62
BRCA1P38398 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC18.91■□□□□ 0.62
BRCA1P38398 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRCA1P38398 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.91■□□□□ 0.62
BRCA1P38398 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
BRCA1P38398 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
BRCA1P38398 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
BRCA1P38398 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRCA1P38398 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRCA1P38398 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
BRCA1P38398 AC007787.1-201ENST00000588095 1583 ntBASIC18.91■□□□□ 0.62
BRCA1P38398 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.91■□□□□ 0.62
BRCA1P38398 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.91■□□□□ 0.62
BRCA1P38398 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.91■□□□□ 0.62
BRCA1P38398 NPPA-201ENST00000376476 728 ntTSL 3 BASIC18.9■□□□□ 0.62
BRCA1P38398 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
BRCA1P38398 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC18.9■□□□□ 0.62
BRCA1P38398 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC18.9■□□□□ 0.62
BRCA1P38398 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC18.9■□□□□ 0.62
BRCA1P38398 EHF-205ENST00000527935 557 ntTSL 2 BASIC18.9■□□□□ 0.62
BRCA1P38398 AC009779.1-201ENST00000551138 283 ntBASIC18.9■□□□□ 0.62
BRCA1P38398 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC18.9■□□□□ 0.62
BRCA1P38398 AC012044.1-201ENST00000603431 297 ntBASIC18.9■□□□□ 0.62
BRCA1P38398 AC051619.9-201ENST00000623237 597 ntBASIC18.9■□□□□ 0.62
BRCA1P38398 AC006453.1-201ENST00000636037 1257 ntBASIC18.9■□□□□ 0.62
BRCA1P38398 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms