Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL3A1P02461 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.91
COL3A1P02461 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC20.77■□□□□ 0.91
COL3A1P02461 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL3A1P02461 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
COL3A1P02461 ANKRD19P-201ENST00000338192 862 ntBASIC20.76■□□□□ 0.91
COL3A1P02461 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC20.76■□□□□ 0.91
COL3A1P02461 RPL13AP25-201ENST00000484130 612 ntBASIC20.76■□□□□ 0.91
COL3A1P02461 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC20.76■□□□□ 0.91
COL3A1P02461 HILS1-202ENST00000545329 423 ntBASIC20.76■□□□□ 0.91
COL3A1P02461 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC20.76■□□□□ 0.91
COL3A1P02461 APOC4-201ENST00000591600 348 ntTSL 3 BASIC20.76■□□□□ 0.91
COL3A1P02461 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC20.76■□□□□ 0.91
COL3A1P02461 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC20.76■□□□□ 0.91
COL3A1P02461 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
COL3A1P02461 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
COL3A1P02461 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC20.76■□□□□ 0.91
COL3A1P02461 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL3A1P02461 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL3A1P02461 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL3A1P02461 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC20.76■□□□□ 0.91
COL3A1P02461 USE1-206ENST00000595101 1776 ntTSL 2 BASIC20.76■□□□□ 0.91
COL3A1P02461 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL3A1P02461 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL3A1P02461 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
COL3A1P02461 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL3A1P02461 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL3A1P02461 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL3A1P02461 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
COL3A1P02461 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL3A1P02461 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL3A1P02461 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC20.75■□□□□ 0.91
COL3A1P02461 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC20.75■□□□□ 0.91
COL3A1P02461 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC20.75■□□□□ 0.91
COL3A1P02461 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL3A1P02461 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC20.75■□□□□ 0.91
COL3A1P02461 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
COL3A1P02461 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC20.75■□□□□ 0.91
COL3A1P02461 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC20.75■□□□□ 0.91
COL3A1P02461 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL3A1P02461 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL3A1P02461 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL3A1P02461 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC20.75■□□□□ 0.91
COL3A1P02461 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL3A1P02461 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC20.75■□□□□ 0.91
COL3A1P02461 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC20.75■□□□□ 0.91
COL3A1P02461 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL3A1P02461 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL3A1P02461 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL3A1P02461 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL3A1P02461 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL3A1P02461 RNU1-114P-201ENST00000365297 166 ntBASIC20.75■□□□□ 0.91
COL3A1P02461 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL3A1P02461 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL3A1P02461 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC20.75■□□□□ 0.91
COL3A1P02461 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL3A1P02461 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL3A1P02461 AC106760.1-201ENST00000508690 800 ntBASIC20.75■□□□□ 0.91
COL3A1P02461 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC20.75■□□□□ 0.91
COL3A1P02461 ATF5-205ENST00000600336 682 ntTSL 2 BASIC20.75■□□□□ 0.91
COL3A1P02461 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC20.75■□□□□ 0.91
COL3A1P02461 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL3A1P02461 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL3A1P02461 AC090616.6-203ENST00000579186 1945 ntBASIC20.74■□□□□ 0.91
COL3A1P02461 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL3A1P02461 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC20.74■□□□□ 0.91
COL3A1P02461 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
COL3A1P02461 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL3A1P02461 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL3A1P02461 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.74■□□□□ 0.91
COL3A1P02461 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL3A1P02461 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL3A1P02461 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL3A1P02461 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC20.74■□□□□ 0.91
COL3A1P02461 ACA64.2-201ENST00000459014 129 ntBASIC20.74■□□□□ 0.91
COL3A1P02461 AC068587.3-201ENST00000526613 355 ntBASIC20.74■□□□□ 0.91
COL3A1P02461 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL3A1P02461 AC106886.1-201ENST00000568660 600 ntBASIC20.74■□□□□ 0.91
COL3A1P02461 AC015936.2-201ENST00000593177 259 ntBASIC20.74■□□□□ 0.91
COL3A1P02461 AC133539.2-201ENST00000604757 467 ntBASIC20.74■□□□□ 0.91
COL3A1P02461 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC20.74■□□□□ 0.91
COL3A1P02461 WNT11-204ENST00000621122 789 ntTSL 5 BASIC20.74■□□□□ 0.91
COL3A1P02461 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL3A1P02461 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
COL3A1P02461 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC20.73■□□□□ 0.91
COL3A1P02461 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL3A1P02461 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL3A1P02461 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC20.73■□□□□ 0.91
COL3A1P02461 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL3A1P02461 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
COL3A1P02461 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL3A1P02461 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL3A1P02461 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
COL3A1P02461 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
COL3A1P02461 AC112492.5-201ENST00000421897 457 ntBASIC20.73■□□□□ 0.91
COL3A1P02461 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC20.73■□□□□ 0.91
COL3A1P02461 AC011495.1-201ENST00000498085 584 ntBASIC20.73■□□□□ 0.91
COL3A1P02461 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL3A1P02461 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
COL3A1P02461 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms