Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC084121.3-201ENST00000641716 218 ntBASIC15.75■□□□□ 0.11
VPS4BO75351 AC105233.6-201ENST00000642093 218 ntBASIC15.75■□□□□ 0.11
VPS4BO75351 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.75■□□□□ 0.11
VPS4BO75351 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
VPS4BO75351 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.75■□□□□ 0.11
VPS4BO75351 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.75■□□□□ 0.11
VPS4BO75351 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.75■□□□□ 0.11
VPS4BO75351 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
VPS4BO75351 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VPS4BO75351 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
VPS4BO75351 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS4BO75351 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.74■□□□□ 0.11
VPS4BO75351 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
VPS4BO75351 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
VPS4BO75351 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS4BO75351 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS4BO75351 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.74■□□□□ 0.11
VPS4BO75351 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 AC020658.6-201ENST00000623564 1870 ntBASIC15.74■□□□□ 0.11
VPS4BO75351 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS4BO75351 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS4BO75351 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
VPS4BO75351 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS4BO75351 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
VPS4BO75351 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.74■□□□□ 0.11
VPS4BO75351 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 HMGA1P7-201ENST00000406908 502 ntBASIC15.74■□□□□ 0.11
VPS4BO75351 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
VPS4BO75351 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS4BO75351 INGX-202ENST00000489074 768 ntBASIC15.74■□□□□ 0.11
VPS4BO75351 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
VPS4BO75351 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.74■□□□□ 0.11
VPS4BO75351 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.74■□□□□ 0.11
VPS4BO75351 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC15.74■□□□□ 0.11
VPS4BO75351 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS4BO75351 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.74■□□□□ 0.11
VPS4BO75351 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
VPS4BO75351 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
VPS4BO75351 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.74■□□□□ 0.11
VPS4BO75351 TMBIM7P-203ENST00000641617 1718 ntBASIC15.74■□□□□ 0.11
VPS4BO75351 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
VPS4BO75351 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS4BO75351 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.74■□□□□ 0.11
VPS4BO75351 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
VPS4BO75351 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS4BO75351 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS4BO75351 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS4BO75351 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS4BO75351 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
VPS4BO75351 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS4BO75351 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS4BO75351 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VPS4BO75351 AC011477.6-201ENST00000604980 1927 ntBASIC15.73■□□□□ 0.11
VPS4BO75351 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.73■□□□□ 0.11
VPS4BO75351 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
VPS4BO75351 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS4BO75351 GK-202ENST00000378941 458 ntTSL 3 BASIC15.73■□□□□ 0.11
VPS4BO75351 RHOQP3-201ENST00000437982 621 ntBASIC15.73■□□□□ 0.11
VPS4BO75351 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC15.73■□□□□ 0.11
VPS4BO75351 AC093214.1-201ENST00000511688 1107 ntBASIC15.73■□□□□ 0.11
VPS4BO75351 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.73■□□□□ 0.11
VPS4BO75351 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.73■□□□□ 0.11
VPS4BO75351 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.73■□□□□ 0.11
VPS4BO75351 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
VPS4BO75351 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.73■□□□□ 0.11
VPS4BO75351 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
VPS4BO75351 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms