Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
LMX1BO60663 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
LMX1BO60663 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
LMX1BO60663 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 AC005237.2-201ENST00000434368 219 ntBASIC14.11□□□□□ -0.15
LMX1BO60663 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC14.11□□□□□ -0.15
LMX1BO60663 FAM86C2P-203ENST00000528684 1004 ntBASIC14.11□□□□□ -0.15
LMX1BO60663 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 IGHV3OR16-6-201ENST00000568775 360 ntBASIC14.11□□□□□ -0.15
LMX1BO60663 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.11□□□□□ -0.15
LMX1BO60663 CD7-202ENST00000578509 925 ntTSL 3 BASIC14.11□□□□□ -0.15
LMX1BO60663 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.11□□□□□ -0.15
LMX1BO60663 MIR3909-201ENST00000579518 119 ntBASIC14.11□□□□□ -0.15
LMX1BO60663 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.11□□□□□ -0.15
LMX1BO60663 AC026120.1-201ENST00000611536 926 ntBASIC14.11□□□□□ -0.15
LMX1BO60663 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC14.11□□□□□ -0.15
LMX1BO60663 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC14.11□□□□□ -0.15
LMX1BO60663 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.11□□□□□ -0.15
LMX1BO60663 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC14.11□□□□□ -0.15
LMX1BO60663 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LMX1BO60663 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
LMX1BO60663 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.1□□□□□ -0.15
LMX1BO60663 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
LMX1BO60663 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
LMX1BO60663 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
LMX1BO60663 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.1□□□□□ -0.15
LMX1BO60663 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.1□□□□□ -0.15
LMX1BO60663 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC14.1□□□□□ -0.15
LMX1BO60663 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.1□□□□□ -0.15
LMX1BO60663 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.1□□□□□ -0.15
LMX1BO60663 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 FALEC-201ENST00000416894 566 ntTSL 3 BASIC14.1□□□□□ -0.15
LMX1BO60663 AL671277.1-201ENST00000429656 993 ntBASIC14.1□□□□□ -0.15
LMX1BO60663 WBP2-203ENST00000433525 928 ntTSL 2 BASIC14.1□□□□□ -0.15
LMX1BO60663 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.1□□□□□ -0.15
LMX1BO60663 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
LMX1BO60663 AC190387.1-201ENST00000551683 408 ntBASIC14.1□□□□□ -0.15
LMX1BO60663 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC14.1□□□□□ -0.15
LMX1BO60663 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC14.1□□□□□ -0.15
LMX1BO60663 AL009183.1-201ENST00000603760 355 ntBASIC14.1□□□□□ -0.15
LMX1BO60663 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.1□□□□□ -0.15
LMX1BO60663 AJ011932.1-201ENST00000621707 465 ntBASIC14.1□□□□□ -0.15
LMX1BO60663 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC14.1□□□□□ -0.15
LMX1BO60663 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC14.1□□□□□ -0.15
LMX1BO60663 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
LMX1BO60663 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.1□□□□□ -0.15
LMX1BO60663 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
LMX1BO60663 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.1□□□□□ -0.15
LMX1BO60663 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC14.1□□□□□ -0.15
LMX1BO60663 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.1□□□□□ -0.15
LMX1BO60663 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
LMX1BO60663 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
LMX1BO60663 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.09□□□□□ -0.15
LMX1BO60663 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.09□□□□□ -0.15
LMX1BO60663 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
LMX1BO60663 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.09□□□□□ -0.15
LMX1BO60663 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
LMX1BO60663 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LMX1BO60663 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
LMX1BO60663 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms