Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.18
MSH5O43196 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
MSH5O43196 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC22.39■■□□□ 1.18
MSH5O43196 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
MSH5O43196 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC22.39■■□□□ 1.17
MSH5O43196 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
MSH5O43196 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC22.39■■□□□ 1.17
MSH5O43196 GK-202ENST00000378941 458 ntTSL 3 BASIC22.39■■□□□ 1.17
MSH5O43196 MTND3P20-201ENST00000407663 186 ntBASIC22.39■■□□□ 1.17
MSH5O43196 AL359541.1-201ENST00000431097 575 ntTSL 3 BASIC22.39■■□□□ 1.17
MSH5O43196 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC22.39■■□□□ 1.17
MSH5O43196 LINC00349-201ENST00000448748 841 ntTSL 5 BASIC22.39■■□□□ 1.17
MSH5O43196 ESRRAP2-203ENST00000453309 822 ntTSL 5 BASIC22.39■■□□□ 1.17
MSH5O43196 RNA5SP421-201ENST00000516864 134 ntBASIC22.39■■□□□ 1.17
MSH5O43196 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
MSH5O43196 AL050343.1-203ENST00000586761 1290 ntTSL 3 BASIC22.39■■□□□ 1.17
MSH5O43196 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
MSH5O43196 AC069304.3-201ENST00000603938 1084 ntBASIC22.39■■□□□ 1.17
MSH5O43196 ELOCP35-201ENST00000604289 336 ntBASIC22.39■■□□□ 1.17
MSH5O43196 LINC00682-204ENST00000637677 931 ntTSL 5 BASIC22.39■■□□□ 1.17
MSH5O43196 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC22.39■■□□□ 1.17
MSH5O43196 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
MSH5O43196 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
MSH5O43196 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
MSH5O43196 CR382285.2-201ENST00000624662 1495 ntBASIC22.39■■□□□ 1.17
MSH5O43196 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
MSH5O43196 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
MSH5O43196 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
MSH5O43196 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC22.39■■□□□ 1.17
MSH5O43196 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC22.39■■□□□ 1.17
MSH5O43196 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
MSH5O43196 AC105917.1-201ENST00000506637 2539 ntBASIC22.38■■□□□ 1.17
MSH5O43196 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC22.38■■□□□ 1.17
MSH5O43196 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 REM2-202ENST00000536884 1331 ntTSL 2 BASIC22.38■■□□□ 1.17
MSH5O43196 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 NDUFB6-201ENST00000350021 666 ntTSL 2 BASIC22.38■■□□□ 1.17
MSH5O43196 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 Y_RNA.318-201ENST00000365131 97 ntBASIC22.38■■□□□ 1.17
MSH5O43196 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 PMS2P4-201ENST00000412466 1052 ntBASIC22.38■■□□□ 1.17
MSH5O43196 HMGB3P5-201ENST00000428894 612 ntBASIC22.38■■□□□ 1.17
MSH5O43196 GSAP-205ENST00000430584 600 ntTSL 5 BASIC22.38■■□□□ 1.17
MSH5O43196 AL590408.1-201ENST00000430905 453 ntTSL 3 BASIC22.38■■□□□ 1.17
MSH5O43196 SIGLEC30P-201ENST00000455569 941 ntBASIC22.38■■□□□ 1.17
MSH5O43196 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 INGX-202ENST00000489074 768 ntBASIC22.38■■□□□ 1.17
MSH5O43196 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC22.38■■□□□ 1.17
MSH5O43196 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC22.38■■□□□ 1.17
MSH5O43196 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC22.38■■□□□ 1.17
MSH5O43196 ANKS1B-205ENST00000546568 1281 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 VPS29-203ENST00000546588 1059 ntTSL 3 BASIC22.38■■□□□ 1.17
MSH5O43196 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC22.38■■□□□ 1.17
MSH5O43196 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC22.38■■□□□ 1.17
MSH5O43196 AC009464.1-201ENST00000615731 469 ntBASIC22.38■■□□□ 1.17
MSH5O43196 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC22.38■■□□□ 1.17
MSH5O43196 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC22.38■■□□□ 1.17
MSH5O43196 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC22.38■■□□□ 1.17
MSH5O43196 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC22.38■■□□□ 1.17
MSH5O43196 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC22.38■■□□□ 1.17
MSH5O43196 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH5O43196 AC091305.2-201ENST00000624049 1576 ntBASIC22.38■■□□□ 1.17
MSH5O43196 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH5O43196 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC22.37■■□□□ 1.17
MSH5O43196 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH5O43196 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH5O43196 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH5O43196 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC22.37■■□□□ 1.17
MSH5O43196 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH5O43196 AC132938.5-201ENST00000624980 1813 ntBASIC22.37■■□□□ 1.17
MSH5O43196 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH5O43196 CLDN20-201ENST00000367165 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH5O43196 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
MSH5O43196 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
MSH5O43196 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH5O43196 KLF4P1-201ENST00000412782 1185 ntBASIC22.37■■□□□ 1.17
MSH5O43196 AL357060.2-201ENST00000440578 1025 ntTSL 3 BASIC22.37■■□□□ 1.17
MSH5O43196 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC22.37■■□□□ 1.17
MSH5O43196 AC023141.5-201ENST00000458585 616 ntBASIC22.37■■□□□ 1.17
MSH5O43196 DUX4L27-201ENST00000554796 1261 ntBASIC22.37■■□□□ 1.17
MSH5O43196 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC22.37■■□□□ 1.17
MSH5O43196 AC073111.2-201ENST00000605657 1075 ntBASIC22.37■■□□□ 1.17
MSH5O43196 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
MSH5O43196 AL356490.1-201ENST00000623079 479 ntBASIC22.37■■□□□ 1.17
MSH5O43196 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
MSH5O43196 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH5O43196 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH5O43196 NDUFA5-212ENST00000618945 1432 ntTSL 2 BASIC22.37■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms