Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC17.95■□□□□ 0.46
COL20A1Q9P218 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
COL20A1Q9P218 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL20A1Q9P218 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC17.95■□□□□ 0.46
COL20A1Q9P218 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.95■□□□□ 0.46
COL20A1Q9P218 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC17.95■□□□□ 0.46
COL20A1Q9P218 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC17.95■□□□□ 0.46
COL20A1Q9P218 AC008735.3-201ENST00000596646 500 ntBASIC17.95■□□□□ 0.46
COL20A1Q9P218 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL20A1Q9P218 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL20A1Q9P218 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL20A1Q9P218 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL20A1Q9P218 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL20A1Q9P218 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL20A1Q9P218 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.95■□□□□ 0.46
COL20A1Q9P218 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL20A1Q9P218 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL20A1Q9P218 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL20A1Q9P218 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL20A1Q9P218 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL20A1Q9P218 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL20A1Q9P218 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL20A1Q9P218 AL121723.1-201ENST00000445194 1519 ntBASIC17.94■□□□□ 0.46
COL20A1Q9P218 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL20A1Q9P218 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL20A1Q9P218 TP73-209ENST00000603362 1668 ntTSL 5 BASIC17.94■□□□□ 0.46
COL20A1Q9P218 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL20A1Q9P218 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL20A1Q9P218 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.94■□□□□ 0.46
COL20A1Q9P218 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
COL20A1Q9P218 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
COL20A1Q9P218 RAC2-202ENST00000401529 569 ntTSL 4 BASIC17.94■□□□□ 0.46
COL20A1Q9P218 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL20A1Q9P218 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC17.94■□□□□ 0.46
COL20A1Q9P218 CMC2-214ENST00000565925 640 ntTSL 5 BASIC17.94■□□□□ 0.46
COL20A1Q9P218 AC010319.3-201ENST00000597028 470 ntBASIC17.94■□□□□ 0.46
COL20A1Q9P218 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.94■□□□□ 0.46
COL20A1Q9P218 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
COL20A1Q9P218 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
COL20A1Q9P218 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
COL20A1Q9P218 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
COL20A1Q9P218 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
COL20A1Q9P218 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL20A1Q9P218 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
COL20A1Q9P218 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
COL20A1Q9P218 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.93■□□□□ 0.46
COL20A1Q9P218 AC112504.1-201ENST00000623415 1841 ntBASIC17.93■□□□□ 0.46
COL20A1Q9P218 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.93■□□□□ 0.46
COL20A1Q9P218 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
COL20A1Q9P218 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC17.93■□□□□ 0.46
COL20A1Q9P218 ATP5G2P4-201ENST00000442175 420 ntBASIC17.93■□□□□ 0.46
COL20A1Q9P218 GPR53P-205ENST00000457298 1084 ntBASIC17.93■□□□□ 0.46
COL20A1Q9P218 ACA64.2-201ENST00000459014 129 ntBASIC17.93■□□□□ 0.46
COL20A1Q9P218 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.93■□□□□ 0.46
COL20A1Q9P218 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC17.93■□□□□ 0.46
COL20A1Q9P218 IGHV3-71-201ENST00000523324 359 ntBASIC17.93■□□□□ 0.46
COL20A1Q9P218 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.93■□□□□ 0.46
COL20A1Q9P218 KRT17P8-201ENST00000540749 863 ntBASIC17.93■□□□□ 0.46
COL20A1Q9P218 AC124283.3-201ENST00000570869 594 ntBASIC17.93■□□□□ 0.46
COL20A1Q9P218 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC17.93■□□□□ 0.46
COL20A1Q9P218 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.93■□□□□ 0.46
COL20A1Q9P218 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC17.93■□□□□ 0.46
COL20A1Q9P218 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC17.93■□□□□ 0.46
COL20A1Q9P218 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.93■□□□□ 0.46
COL20A1Q9P218 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.93■□□□□ 0.46
COL20A1Q9P218 AC024909.3-201ENST00000611513 2257 ntBASIC17.93■□□□□ 0.46
COL20A1Q9P218 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 AL118508.1-201ENST00000613502 2345 ntBASIC17.93■□□□□ 0.46
COL20A1Q9P218 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.93■□□□□ 0.46
COL20A1Q9P218 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
COL20A1Q9P218 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL20A1Q9P218 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.93■□□□□ 0.46
COL20A1Q9P218 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL20A1Q9P218 HNRNPA1P48-201ENST00000562726 1377 ntBASIC17.92■□□□□ 0.46
COL20A1Q9P218 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL20A1Q9P218 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.92■□□□□ 0.46
COL20A1Q9P218 AL603832.2-201ENST00000566195 2125 ntBASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms