Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC022532.1-201ENST00000624563 1728 ntBASIC14.06□□□□□ -0.16
NKX3-1Q99801 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NKX3-1Q99801 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC14.06□□□□□ -0.16
NKX3-1Q99801 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 RNU1-129P-201ENST00000384064 167 ntBASIC14.05□□□□□ -0.16
NKX3-1Q99801 MRPL20P1-201ENST00000400819 433 ntBASIC14.05□□□□□ -0.16
NKX3-1Q99801 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 RPS29-206ENST00000557111 488 ntTSL 2 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 AC105339.3-201ENST00000560043 636 ntBASIC14.05□□□□□ -0.16
NKX3-1Q99801 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 U1.21-201ENST00000580816 167 ntBASIC14.05□□□□□ -0.16
NKX3-1Q99801 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 AL049840.3-201ENST00000602669 611 ntBASIC14.05□□□□□ -0.16
NKX3-1Q99801 AL031055.1-201ENST00000606362 631 ntBASIC14.05□□□□□ -0.16
NKX3-1Q99801 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 AC007686.3-201ENST00000619017 3487 ntBASIC14.05□□□□□ -0.16
NKX3-1Q99801 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 AL161772.1-201ENST00000610494 4412 ntBASIC14.05□□□□□ -0.16
NKX3-1Q99801 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NKX3-1Q99801 AC008677.1-201ENST00000519230 1561 ntBASIC14.05□□□□□ -0.16
NKX3-1Q99801 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
NKX3-1Q99801 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.04□□□□□ -0.16
NKX3-1Q99801 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 AC138035.3-201ENST00000622706 2791 ntBASIC14.04□□□□□ -0.16
NKX3-1Q99801 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 MTRF1LP2-201ENST00000506027 1122 ntBASIC14.04□□□□□ -0.16
NKX3-1Q99801 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 ETFA-208ENST00000559602 792 ntTSL 3 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 MIR4751-201ENST00000578027 74 ntBASIC14.04□□□□□ -0.16
NKX3-1Q99801 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.04□□□□□ -0.16
NKX3-1Q99801 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX3-1Q99801 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms