Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 AC024681.1-201ENST00000521917 487 ntBASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 AC073352.2-201ENST00000609385 439 ntBASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMC1BQ8NDV3 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 MIR1227-201ENST00000408484 88 ntBASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 HNRNPA1P63-201ENST00000427917 963 ntBASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 AL590640.2-201ENST00000457038 527 ntBASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 MIR4321-201ENST00000592276 80 ntBASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 AC148477.9-201ENST00000623974 539 ntBASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 AL138709.1-201ENST00000614840 1693 ntBASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC18.81■□□□□ 0.6
SMC1BQ8NDV3 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 AL627389.1-201ENST00000413508 1182 ntBASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 AC234782.1-201ENST00000451950 919 ntBASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 NPM1P43-201ENST00000558669 786 ntBASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 AC005357.2-202ENST00000590507 1060 ntBASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 AC093813.1-201ENST00000605066 256 ntBASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 AC008132.1-202ENST00000342005 1389 ntBASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SMC1BQ8NDV3 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 NFIC-211ENST00000641145 8399 ntBASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMC1BQ8NDV3 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms