Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MPHOSPH9-217ENST00000545556 3634 ntTSL 54.1□□□□□ -1.753e-7■□□□□ 10.7
YBX3P16989 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.769e-9■□□□□ 10.7
YBX3P16989 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.39e-9■□□□□ 10.7
YBX3P16989 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.739e-9■□□□□ 10.7
YBX3P16989 ARL2-206ENST00000533729 795 ntTSL 5 BASIC14.36□□□□□ -0.119e-9■□□□□ 10.7
YBX3P16989 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.28■■□□□ 17e-7■□□□□ 10.7
YBX3P16989 INAFM2-201ENST00000560415 594 ntTSL 27.23□□□□□ -1.257e-7■□□□□ 10.7
YBX3P16989 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.513e-6■□□□□ 10.7
YBX3P16989 APMAP-202ENST00000451442 2117 ntTSL 513.33□□□□□ -0.283e-6■□□□□ 10.7
YBX3P16989 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC27.72■■■□□ 2.032e-17■□□□□ 10.7
YBX3P16989 PRDX1-204ENST00000424390 795 ntTSL 218.63■□□□□ 0.572e-17■□□□□ 10.7
YBX3P16989 PRDX1-203ENST00000372079 609 ntTSL 3 BASIC16.21■□□□□ 0.192e-17■□□□□ 10.7
YBX3P16989 PRDX1-202ENST00000319248 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.132e-17■□□□□ 10.7
YBX3P16989 PRDX1-205ENST00000447184 606 ntTSL 510.21□□□□□ -0.772e-17■□□□□ 10.7
YBX3P16989 USP16-202ENST00000399973 581 ntTSL 311.05□□□□□ -0.643e-8■□□□□ 10.7
YBX3P16989 NSD2-227ENST00000515806 816 ntTSL 313.97□□□□□ -0.175e-8■□□□□ 10.7
YBX3P16989 RACK1-212ENST00000505461 1005 ntTSL 512.41□□□□□ -0.429e-61■□□□□ 10.7
YBX3P16989 RACK1-215ENST00000507261 590 ntTSL 310.37□□□□□ -0.759e-61■□□□□ 10.7
YBX3P16989 RACK1-235ENST00000626067 564 ntTSL 2 BASIC9.65□□□□□ -0.869e-61■□□□□ 10.7
YBX3P16989 RACK1-220ENST00000508963 581 ntTSL 27.68□□□□□ -1.189e-61■□□□□ 10.7
YBX3P16989 EIF4G2-217ENST00000531180 557 ntTSL 44.59□□□□□ -1.677e-16■□□□□ 10.7
YBX3P16989 ENO2-207ENST00000537688 547 ntTSL 521.83■■□□□ 1.099e-7■□□□□ 10.7
YBX3P16989 ENO2-210ENST00000539713 543 ntTSL 421.45■■□□□ 1.029e-7■□□□□ 10.7
YBX3P16989 ENO2-212ENST00000542509 825 ntTSL 518.25■□□□□ 0.519e-7■□□□□ 10.7
YBX3P16989 ENO2-208ENST00000537838 541 ntTSL 417.8■□□□□ 0.449e-7■□□□□ 10.7
YBX3P16989 ENO2-206ENST00000536199 823 ntTSL 517.49■□□□□ 0.399e-7■□□□□ 10.7
YBX3P16989 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.159e-7■□□□□ 10.7
YBX3P16989 ENO2-209ENST00000538763 1646 ntTSL 5 BASIC15.25■□□□□ 0.039e-7■□□□□ 10.7
YBX3P16989 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.019e-7■□□□□ 10.7
YBX3P16989 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC13.09□□□□□ -0.319e-7■□□□□ 10.7
YBX3P16989 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.081e-6■□□□□ 10.7
YBX3P16989 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC19.68■□□□□ 0.741e-6■□□□□ 10.7
YBX3P16989 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.216e-7■□□□□ 10.7
YBX3P16989 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.156e-7■□□□□ 10.7
YBX3P16989 C9orf16-202ENST00000486420 434 ntTSL 515.79■□□□□ 0.121e-8■□□□□ 10.7
YBX3P16989 DNM1L-217ENST00000548671 750 ntTSL 323.87■■□□□ 1.411e-6■□□□□ 10.7
YBX3P16989 DNM1L-225ENST00000551076 556 ntTSL 418.6■□□□□ 0.571e-6■□□□□ 10.7
YBX3P16989 DNM1L-222ENST00000550011 576 ntTSL 414.13□□□□□ -0.151e-6■□□□□ 10.7
YBX3P16989 DNM1L-204ENST00000413295 1064 ntTSL 211.73□□□□□ -0.531e-6■□□□□ 10.7
YBX3P16989 DNM1L-226ENST00000551476 560 ntTSL 511.71□□□□□ -0.531e-6■□□□□ 10.7
YBX3P16989 DNM1L-206ENST00000434676 1008 ntTSL 211.52□□□□□ -0.571e-6■□□□□ 10.7
YBX3P16989 DNM1L-218ENST00000548750 813 ntTSL 311.48□□□□□ -0.571e-6■□□□□ 10.7
YBX3P16989 DNM1L-215ENST00000547932 417 ntTSL 411.13□□□□□ -0.631e-6■□□□□ 10.7
YBX3P16989 DNM1L-224ENST00000550154 550 ntTSL 511.13□□□□□ -0.631e-6■□□□□ 10.7
YBX3P16989 DNM1L-227ENST00000551643 538 ntTSL 411.13□□□□□ -0.631e-6■□□□□ 10.7
YBX3P16989 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC17.26■□□□□ 0.352e-6■□□□□ 10.7
YBX3P16989 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.112e-6■□□□□ 10.7
YBX3P16989 GRSF1-204ENST00000505068 3561 ntTSL 213.55□□□□□ -0.242e-6■□□□□ 10.7
YBX3P16989 NMT1-206ENST00000587670 537 ntTSL 320.16■□□□□ 0.827e-7■□□□□ 10.7
YBX3P16989 MRPS33-205ENST00000472343 788 ntTSL 215.46■□□□□ 0.073e-8■□□□□ 10.7
YBX3P16989 MRPS33-202ENST00000393008 853 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.363e-8■□□□□ 10.7
YBX3P16989 MRPS33-204ENST00000469351 744 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.43e-8■□□□□ 10.7
YBX3P16989 MRPS33-203ENST00000467334 622 ntTSL 2 BASIC12.07□□□□□ -0.483e-8■□□□□ 10.7
YBX3P16989 MRPS33-201ENST00000324787 4241 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.633e-8■□□□□ 10.7
YBX3P16989 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC6.86□□□□□ -1.313e-8■□□□□ 10.7
YBX3P16989 MRPS33-206ENST00000484502 466 ntTSL 35.22□□□□□ -1.573e-8■□□□□ 10.7
YBX3P16989 COPE-207ENST00000597646 868 ntTSL 326.74■■□□□ 1.872e-8■□□□□ 10.7
YBX3P16989 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.442e-6■□□□□ 10.7
YBX3P16989 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.331e-6■□□□□ 10.7
YBX3P16989 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.681e-6■□□□□ 10.7
YBX3P16989 PTPN7-218ENST00000496197 1463 ntTSL 216.77■□□□□ 0.283e-6■□□□□ 10.7
YBX3P16989 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.271e-6■□□□□ 10.7
YBX3P16989 PTPN7-204ENST00000462815 1147 ntTSL 215.63■□□□□ 0.093e-6■□□□□ 10.7
YBX3P16989 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC24.28■■□□□ 1.481e-11■□□□□ 10.7
YBX3P16989 AC079781.5-203ENST00000641315 2059 nt21.94■■□□□ 1.11e-11■□□□□ 10.7
YBX3P16989 AC079781.5-201ENST00000641390 3211 nt18.52■□□□□ 0.561e-11■□□□□ 10.7
YBX3P16989 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.221e-11■□□□□ 10.7
YBX3P16989 AC079781.5-202ENST00000641784 3743 ntBASIC15.16■□□□□ 0.021e-11■□□□□ 10.7
YBX3P16989 ASNS-203ENST00000394309 2289 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.121e-11■□□□□ 10.7
YBX3P16989 ASNS-205ENST00000422745 1865 ntTSL 5 BASIC12.25□□□□□ -0.451e-11■□□□□ 10.7
YBX3P16989 ASNS-202ENST00000394308 1994 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.571e-11■□□□□ 10.7
YBX3P16989 ASNS-213ENST00000454046 1947 ntTSL 510.48□□□□□ -0.731e-11■□□□□ 10.7
YBX3P16989 ASNS-214ENST00000455086 1588 ntTSL 2 BASIC10.26□□□□□ -0.771e-11■□□□□ 10.7
YBX3P16989 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC6.87□□□□□ -1.311e-11■□□□□ 10.7
YBX3P16989 AKT2-239ENST00000583859 567 ntTSL 533.57■■■□□ 2.966e-8■□□□□ 10.7
YBX3P16989 AKT2-203ENST00000391844 1795 ntTSL 1 (best)30.24■■■□□ 2.436e-8■□□□□ 10.7
YBX3P16989 AKT2-214ENST00000456441 582 ntTSL 329.83■■■□□ 2.376e-8■□□□□ 10.7
YBX3P16989 AKT2-240ENST00000584288 1706 ntTSL 222.91■■□□□ 1.266e-8■□□□□ 10.7
YBX3P16989 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.99■■□□□ 1.116e-8■□□□□ 10.7
YBX3P16989 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.096e-8■□□□□ 10.7
YBX3P16989 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.83■■□□□ 1.096e-8■□□□□ 10.7
YBX3P16989 AKT2-228ENST00000537834 1402 ntTSL 221.82■■□□□ 1.086e-8■□□□□ 10.7
YBX3P16989 AKT2-221ENST00000487537 954 ntTSL 221.46■■□□□ 1.036e-8■□□□□ 10.7
YBX3P16989 AKT2-212ENST00000441941 974 ntTSL 420.27■□□□□ 0.846e-8■□□□□ 10.7
YBX3P16989 AKT2-207ENST00000416362 974 ntTSL 519.3■□□□□ 0.686e-8■□□□□ 10.7
YBX3P16989 AKT2-205ENST00000392037 681 ntTSL 218.87■□□□□ 0.616e-8■□□□□ 10.7
YBX3P16989 AKT2-213ENST00000452077 577 ntTSL 316.37■□□□□ 0.216e-8■□□□□ 10.7
YBX3P16989 AKT2-229ENST00000578123 564 ntTSL 415.09■□□□□ 0.016e-8■□□□□ 10.7
YBX3P16989 AKT2-224ENST00000492463 737 ntTSL 514.68□□□□□ -0.066e-8■□□□□ 10.7
YBX3P16989 AKT2-241ENST00000596634 583 ntTSL 514.48□□□□□ -0.096e-8■□□□□ 10.7
YBX3P16989 AKT2-201ENST00000311278 1393 ntTSL 1 (best) BASIC14.22□□□□□ -0.136e-8■□□□□ 10.7
YBX3P16989 AKT2-223ENST00000491778 573 ntTSL 413.68□□□□□ -0.226e-8■□□□□ 10.7
YBX3P16989 AKT2-202ENST00000358335 546 ntTSL 413.6□□□□□ -0.236e-8■□□□□ 10.7
YBX3P16989 AKT2-219ENST00000486368 606 ntTSL 413.17□□□□□ -0.36e-8■□□□□ 10.7
YBX3P16989 AKT2-209ENST00000423127 798 ntTSL 512.36□□□□□ -0.436e-8■□□□□ 10.7
YBX3P16989 HDDC3-203ENST00000494993 1220 ntTSL 230.3■■■□□ 2.447e-9■□□□□ 10.7
YBX3P16989 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC23.97■■□□□ 1.437e-9■□□□□ 10.7
YBX3P16989 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC23.81■■□□□ 1.47e-9■□□□□ 10.7
YBX3P16989 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.387e-9■□□□□ 10.7
YBX3P16989 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC19.77■□□□□ 0.762e-7■□□□□ 10.7
Retrieved 100 of 29,075 protein–RNA pairs in 272.2 ms