Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SIX3O95343 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.68■□□□□ 0.1
SIX3O95343 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SIX3O95343 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SIX3O95343 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SIX3O95343 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.68■□□□□ 0.1
SIX3O95343 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SIX3O95343 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.68■□□□□ 0.1
SIX3O95343 MIR940-201ENST00000401276 94 ntBASIC15.68■□□□□ 0.1
SIX3O95343 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.68■□□□□ 0.1
SIX3O95343 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SIX3O95343 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.68■□□□□ 0.1
SIX3O95343 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SIX3O95343 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.68■□□□□ 0.1
SIX3O95343 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SIX3O95343 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.68■□□□□ 0.1
SIX3O95343 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.68■□□□□ 0.1
SIX3O95343 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SIX3O95343 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.68■□□□□ 0.1
SIX3O95343 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.68■□□□□ 0.1
SIX3O95343 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.68■□□□□ 0.1
SIX3O95343 AC068418.2-201ENST00000577309 3703 ntBASIC15.68■□□□□ 0.1
SIX3O95343 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SIX3O95343 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SIX3O95343 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SIX3O95343 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.68■□□□□ 0.1
SIX3O95343 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SIX3O95343 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.68■□□□□ 0.1
SIX3O95343 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.68■□□□□ 0.1
SIX3O95343 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
SIX3O95343 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.68■□□□□ 0.1
SIX3O95343 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.68■□□□□ 0.1
SIX3O95343 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
SIX3O95343 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SIX3O95343 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SIX3O95343 AC105250.1-201ENST00000509378 2057 ntBASIC15.67■□□□□ 0.1
SIX3O95343 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.67■□□□□ 0.1
SIX3O95343 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.67■□□□□ 0.1
SIX3O95343 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 BNIP3P1-202ENST00000550043 1585 ntBASIC15.67■□□□□ 0.1
SIX3O95343 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.67■□□□□ 0.1
SIX3O95343 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.67■□□□□ 0.1
SIX3O95343 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.67■□□□□ 0.1
SIX3O95343 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SIX3O95343 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SIX3O95343 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 AC142381.1-201ENST00000426099 345 ntBASIC15.67■□□□□ 0.1
SIX3O95343 ADH5P3-201ENST00000433842 1137 ntBASIC15.67■□□□□ 0.1
SIX3O95343 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.67■□□□□ 0.1
SIX3O95343 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.67■□□□□ 0.1
SIX3O95343 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.67■□□□□ 0.1
SIX3O95343 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.67■□□□□ 0.1
SIX3O95343 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.67■□□□□ 0.1
SIX3O95343 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.67■□□□□ 0.1
SIX3O95343 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 AC008267.7-201ENST00000624570 1194 ntBASIC15.67■□□□□ 0.1
SIX3O95343 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.67■□□□□ 0.1
SIX3O95343 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
SIX3O95343 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.67■□□□□ 0.1
SIX3O95343 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 AL691432.1-201ENST00000596308 1422 ntBASIC15.67■□□□□ 0.1
SIX3O95343 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.67■□□□□ 0.1
SIX3O95343 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SIX3O95343 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.67■□□□□ 0.1
SIX3O95343 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.66■□□□□ 0.1
SIX3O95343 AC090616.6-203ENST00000579186 1945 ntBASIC15.66■□□□□ 0.1
SIX3O95343 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
SIX3O95343 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SIX3O95343 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SIX3O95343 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
SIX3O95343 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
SIX3O95343 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SIX3O95343 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SIX3O95343 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SIX3O95343 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.66■□□□□ 0.1
SIX3O95343 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
SIX3O95343 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
SIX3O95343 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SIX3O95343 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
SIX3O95343 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
SIX3O95343 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SIX3O95343 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
SIX3O95343 AC087481.3-201ENST00000602886 1894 ntBASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms