Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RTN3O95197 FO393414.2-201ENST00000405153 598 ntBASIC16.9■□□□□ 0.3
RTN3O95197 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RTN3O95197 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.9■□□□□ 0.3
RTN3O95197 AL512361.1-201ENST00000554200 418 ntBASIC16.9■□□□□ 0.3
RTN3O95197 AC010336.2-201ENST00000564226 506 ntBASIC16.9■□□□□ 0.3
RTN3O95197 AC009407.1-201ENST00000568958 598 ntBASIC16.9■□□□□ 0.3
RTN3O95197 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.9■□□□□ 0.3
RTN3O95197 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RTN3O95197 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.9■□□□□ 0.3
RTN3O95197 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.9■□□□□ 0.3
RTN3O95197 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.9■□□□□ 0.3
RTN3O95197 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RTN3O95197 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RTN3O95197 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RTN3O95197 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RTN3O95197 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RTN3O95197 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RTN3O95197 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
RTN3O95197 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RTN3O95197 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RTN3O95197 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.9■□□□□ 0.3
RTN3O95197 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RTN3O95197 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.9■□□□□ 0.3
RTN3O95197 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
RTN3O95197 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RTN3O95197 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.9■□□□□ 0.3
RTN3O95197 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RTN3O95197 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
RTN3O95197 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
RTN3O95197 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
RTN3O95197 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
RTN3O95197 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.89■□□□□ 0.29
RTN3O95197 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
RTN3O95197 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.89■□□□□ 0.29
RTN3O95197 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
RTN3O95197 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
RTN3O95197 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
RTN3O95197 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 MIR661-201ENST00000384842 89 ntBASIC16.89■□□□□ 0.29
RTN3O95197 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.89■□□□□ 0.29
RTN3O95197 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.89■□□□□ 0.29
RTN3O95197 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.89■□□□□ 0.29
RTN3O95197 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.89■□□□□ 0.29
RTN3O95197 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.89■□□□□ 0.29
RTN3O95197 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
RTN3O95197 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.89■□□□□ 0.29
RTN3O95197 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.89■□□□□ 0.29
RTN3O95197 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
RTN3O95197 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.89■□□□□ 0.29
RTN3O95197 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.89■□□□□ 0.29
RTN3O95197 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 AC026691.1-201ENST00000602502 2017 ntBASIC16.89■□□□□ 0.29
RTN3O95197 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
RTN3O95197 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.89■□□□□ 0.29
RTN3O95197 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.89■□□□□ 0.29
RTN3O95197 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
RTN3O95197 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
RTN3O95197 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RTN3O95197 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.88■□□□□ 0.29
RTN3O95197 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RTN3O95197 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RTN3O95197 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RTN3O95197 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
RTN3O95197 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
RTN3O95197 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
RTN3O95197 AC006449.6-201ENST00000612330 2296 ntBASIC16.88■□□□□ 0.29
RTN3O95197 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RTN3O95197 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
RTN3O95197 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RTN3O95197 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RTN3O95197 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RTN3O95197 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.88■□□□□ 0.29
RTN3O95197 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.88■□□□□ 0.29
RTN3O95197 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.88■□□□□ 0.29
RTN3O95197 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RTN3O95197 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RTN3O95197 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.88■□□□□ 0.29
RTN3O95197 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.88■□□□□ 0.29
RTN3O95197 AC008738.7-201ENST00000609744 511 ntBASIC16.88■□□□□ 0.29
RTN3O95197 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
RTN3O95197 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RTN3O95197 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RTN3O95197 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RTN3O95197 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms