Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP1O15259 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP1O15259 RN7SL399P-201ENST00000471648 279 ntBASIC20.15■□□□□ 0.82
NPHP1O15259 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC20.15■□□□□ 0.82
NPHP1O15259 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
NPHP1O15259 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP1O15259 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC20.15■□□□□ 0.82
NPHP1O15259 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP1O15259 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP1O15259 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP1O15259 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
NPHP1O15259 CU634019.7-201ENST00000624153 1185 ntBASIC20.15■□□□□ 0.82
NPHP1O15259 FP236241.2-201ENST00000624906 1185 ntBASIC20.15■□□□□ 0.82
NPHP1O15259 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP1O15259 KRT8P22-201ENST00000562317 1415 ntBASIC20.15■□□□□ 0.82
NPHP1O15259 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP1O15259 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC20.15■□□□□ 0.82
NPHP1O15259 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP1O15259 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
NPHP1O15259 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP1O15259 AMT-206ENST00000458307 1860 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP1O15259 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP1O15259 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC20.15■□□□□ 0.82
NPHP1O15259 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP1O15259 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
NPHP1O15259 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP1O15259 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP1O15259 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP1O15259 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP1O15259 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC20.15■□□□□ 0.82
NPHP1O15259 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
NPHP1O15259 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.14■□□□□ 0.82
NPHP1O15259 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
NPHP1O15259 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.14■□□□□ 0.82
NPHP1O15259 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.14■□□□□ 0.81
NPHP1O15259 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC20.14■□□□□ 0.81
NPHP1O15259 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP1O15259 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP1O15259 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP1O15259 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC20.14■□□□□ 0.81
NPHP1O15259 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
NPHP1O15259 AC068587.6-202ENST00000641839 5619 ntBASIC20.14■□□□□ 0.81
NPHP1O15259 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.14■□□□□ 0.81
NPHP1O15259 LINC01144-201ENST00000626198 1710 ntBASIC20.14■□□□□ 0.81
NPHP1O15259 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC20.14■□□□□ 0.81
NPHP1O15259 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
NPHP1O15259 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
NPHP1O15259 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP1O15259 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
NPHP1O15259 AL162726.2-201ENST00000438986 1017 ntBASIC20.14■□□□□ 0.81
NPHP1O15259 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC20.14■□□□□ 0.81
NPHP1O15259 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC20.14■□□□□ 0.81
NPHP1O15259 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC20.14■□□□□ 0.81
NPHP1O15259 SUOX-214ENST00000551841 906 ntTSL 3 BASIC20.14■□□□□ 0.81
NPHP1O15259 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC20.14■□□□□ 0.81
NPHP1O15259 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
NPHP1O15259 APRT-204ENST00000563655 709 ntTSL 5 BASIC20.14■□□□□ 0.81
NPHP1O15259 AC233724.13-201ENST00000598383 410 ntBASIC20.14■□□□□ 0.81
NPHP1O15259 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC20.14■□□□□ 0.81
NPHP1O15259 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC20.14■□□□□ 0.81
NPHP1O15259 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP1O15259 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP1O15259 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP1O15259 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
NPHP1O15259 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP1O15259 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP1O15259 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
NPHP1O15259 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
NPHP1O15259 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.13■□□□□ 0.81
NPHP1O15259 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.13■□□□□ 0.81
NPHP1O15259 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
NPHP1O15259 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.13■□□□□ 0.81
NPHP1O15259 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC20.13■□□□□ 0.81
NPHP1O15259 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 MGST3-203ENST00000367885 680 ntTSL 2 BASIC20.13■□□□□ 0.81
NPHP1O15259 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
NPHP1O15259 AC245100.3-201ENST00000441281 285 ntBASIC20.13■□□□□ 0.81
NPHP1O15259 KLF2P4-201ENST00000451959 1225 ntBASIC20.13■□□□□ 0.81
NPHP1O15259 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
NPHP1O15259 RHOA-206ENST00000454011 889 ntTSL 2 BASIC20.13■□□□□ 0.81
NPHP1O15259 CTBP2P5-201ENST00000454986 1264 ntBASIC20.13■□□□□ 0.81
NPHP1O15259 MFF-223ENST00000524634 647 ntTSL 2 BASIC20.13■□□□□ 0.81
NPHP1O15259 PACS1-203ENST00000524815 628 ntTSL 4 BASIC20.13■□□□□ 0.81
NPHP1O15259 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC20.13■□□□□ 0.81
NPHP1O15259 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
NPHP1O15259 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
NPHP1O15259 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
NPHP1O15259 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP1O15259 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms