Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.15■□□□□ 0.34
FOXN3O00409 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.15■□□□□ 0.34
FOXN3O00409 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXN3O00409 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXN3O00409 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXN3O00409 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
FOXN3O00409 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
FOXN3O00409 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
FOXN3O00409 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC17.14■□□□□ 0.33
FOXN3O00409 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXN3O00409 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
FOXN3O00409 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC17.14■□□□□ 0.33
FOXN3O00409 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXN3O00409 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
FOXN3O00409 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
FOXN3O00409 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXN3O00409 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.14■□□□□ 0.33
FOXN3O00409 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.14■□□□□ 0.33
FOXN3O00409 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.14■□□□□ 0.33
FOXN3O00409 AP000344.2-201ENST00000512987 629 ntBASIC17.14■□□□□ 0.33
FOXN3O00409 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.14■□□□□ 0.33
FOXN3O00409 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.14■□□□□ 0.33
FOXN3O00409 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXN3O00409 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXN3O00409 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC17.14■□□□□ 0.33
FOXN3O00409 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.14■□□□□ 0.33
FOXN3O00409 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC17.14■□□□□ 0.33
FOXN3O00409 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXN3O00409 AC105250.1-201ENST00000509378 2057 ntBASIC17.14■□□□□ 0.33
FOXN3O00409 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXN3O00409 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXN3O00409 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXN3O00409 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.14■□□□□ 0.33
FOXN3O00409 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.14■□□□□ 0.33
FOXN3O00409 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.33
FOXN3O00409 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
FOXN3O00409 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
FOXN3O00409 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.13■□□□□ 0.33
FOXN3O00409 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
FOXN3O00409 KRT8P37-201ENST00000451609 1420 ntBASIC17.13■□□□□ 0.33
FOXN3O00409 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
FOXN3O00409 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC17.13■□□□□ 0.33
FOXN3O00409 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.13■□□□□ 0.33
FOXN3O00409 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
FOXN3O00409 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.13■□□□□ 0.33
FOXN3O00409 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC17.13■□□□□ 0.33
FOXN3O00409 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
FOXN3O00409 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 AC211486.1-202ENST00000416371 468 ntBASIC17.13■□□□□ 0.33
FOXN3O00409 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.13■□□□□ 0.33
FOXN3O00409 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.13■□□□□ 0.33
FOXN3O00409 RBPMS2P1-201ENST00000437762 623 ntBASIC17.13■□□□□ 0.33
FOXN3O00409 AC211476.1-201ENST00000503899 468 ntBASIC17.13■□□□□ 0.33
FOXN3O00409 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.13■□□□□ 0.33
FOXN3O00409 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC17.13■□□□□ 0.33
FOXN3O00409 AC092865.5-201ENST00000545435 363 ntBASIC17.13■□□□□ 0.33
FOXN3O00409 BANF1P1-201ENST00000553684 263 ntBASIC17.13■□□□□ 0.33
FOXN3O00409 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 AC004835.2-201ENST00000603762 682 ntBASIC17.13■□□□□ 0.33
FOXN3O00409 AC018529.1-201ENST00000613063 361 ntBASIC17.13■□□□□ 0.33
FOXN3O00409 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.13■□□□□ 0.33
FOXN3O00409 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.13■□□□□ 0.33
FOXN3O00409 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.13■□□□□ 0.33
FOXN3O00409 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
FOXN3O00409 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC17.13■□□□□ 0.33
FOXN3O00409 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.13■□□□□ 0.33
FOXN3O00409 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
FOXN3O00409 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
FOXN3O00409 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXN3O00409 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC17.12■□□□□ 0.33
FOXN3O00409 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.12■□□□□ 0.33
FOXN3O00409 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.12■□□□□ 0.33
FOXN3O00409 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXN3O00409 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXN3O00409 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.12■□□□□ 0.33
FOXN3O00409 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
FOXN3O00409 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
FOXN3O00409 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
FOXN3O00409 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
FOXN3O00409 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.12■□□□□ 0.33
FOXN3O00409 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
FOXN3O00409 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXN3O00409 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
FOXN3O00409 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
FOXN3O00409 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms