Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 FAM58CP-201ENST00000435741 640 ntBASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 AC243562.2-201ENST00000561247 970 ntBASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 C18orf15-201ENST00000623680 2534 ntBASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TCRBV7S3A2A0A539 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 SPCS2P4-201ENST00000436160 681 ntBASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 KRT8P48-201ENST00000515599 1220 ntBASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 LINC01225-203ENST00000563550 1244 ntBASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 AC024267.1-201ENST00000582320 895 ntBASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TCRBV7S3A2A0A539 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 MIR346-201ENST00000362234 95 ntBASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 RPS8P6-201ENST00000426177 609 ntBASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 RNA5SP410-201ENST00000516285 106 ntBASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
TCRBV7S3A2A0A539 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms