Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC103810.3-201ENST00000583567 96 ntBASIC20.83■□□□□ 0.93
USP54Q70EL1 AL118558.3-201ENST00000607414 1079 ntBASIC20.83■□□□□ 0.93
USP54Q70EL1 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC20.83■□□□□ 0.93
USP54Q70EL1 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC20.83■□□□□ 0.93
USP54Q70EL1 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP54Q70EL1 AL354989.2-201ENST00000435838 1540 ntBASIC20.83■□□□□ 0.93
USP54Q70EL1 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
USP54Q70EL1 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.92
USP54Q70EL1 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
USP54Q70EL1 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
USP54Q70EL1 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC20.83■□□□□ 0.92
USP54Q70EL1 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
USP54Q70EL1 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
USP54Q70EL1 RNA5SP486-201ENST00000515961 83 ntBASIC20.83■□□□□ 0.92
USP54Q70EL1 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC20.83■□□□□ 0.92
USP54Q70EL1 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC20.83■□□□□ 0.92
USP54Q70EL1 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
USP54Q70EL1 MIR4741-201ENST00000579822 90 ntBASIC20.83■□□□□ 0.92
USP54Q70EL1 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC20.83■□□□□ 0.92
USP54Q70EL1 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC20.83■□□□□ 0.92
USP54Q70EL1 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
USP54Q70EL1 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
USP54Q70EL1 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC20.83■□□□□ 0.92
USP54Q70EL1 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
USP54Q70EL1 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP54Q70EL1 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.82■□□□□ 0.92
USP54Q70EL1 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP54Q70EL1 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
USP54Q70EL1 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP54Q70EL1 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
USP54Q70EL1 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP54Q70EL1 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
USP54Q70EL1 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP54Q70EL1 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP54Q70EL1 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP54Q70EL1 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP54Q70EL1 AC104306.2-201ENST00000451877 341 ntBASIC20.82■□□□□ 0.92
USP54Q70EL1 KRT8P13-201ENST00000463294 1010 ntBASIC20.82■□□□□ 0.92
USP54Q70EL1 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC20.82■□□□□ 0.92
USP54Q70EL1 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC20.82■□□□□ 0.92
USP54Q70EL1 AC132938.4-201ENST00000623835 848 ntBASIC20.82■□□□□ 0.92
USP54Q70EL1 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
USP54Q70EL1 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP54Q70EL1 AL023775.1-201ENST00000454907 1746 ntBASIC20.82■□□□□ 0.92
USP54Q70EL1 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP54Q70EL1 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP54Q70EL1 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP54Q70EL1 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP54Q70EL1 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP54Q70EL1 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
USP54Q70EL1 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP54Q70EL1 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USP54Q70EL1 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USP54Q70EL1 AL158070.2-201ENST00000623713 1621 ntBASIC20.81■□□□□ 0.92
USP54Q70EL1 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP54Q70EL1 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP54Q70EL1 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP54Q70EL1 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USP54Q70EL1 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
USP54Q70EL1 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP54Q70EL1 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP54Q70EL1 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP54Q70EL1 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
USP54Q70EL1 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC20.81■□□□□ 0.92
USP54Q70EL1 HOMER2P2-201ENST00000451621 847 ntBASIC20.81■□□□□ 0.92
USP54Q70EL1 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC20.81■□□□□ 0.92
USP54Q70EL1 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC20.81■□□□□ 0.92
USP54Q70EL1 ETV2-208ENST00000621247 941 ntTSL 5 BASIC20.81■□□□□ 0.92
USP54Q70EL1 AL603764.1-201ENST00000636452 321 ntBASIC20.81■□□□□ 0.92
USP54Q70EL1 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC20.81■□□□□ 0.92
USP54Q70EL1 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP54Q70EL1 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC20.81■□□□□ 0.92
USP54Q70EL1 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP54Q70EL1 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
USP54Q70EL1 AC112504.1-201ENST00000623415 1841 ntBASIC20.81■□□□□ 0.92
USP54Q70EL1 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP54Q70EL1 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC20.81■□□□□ 0.92
USP54Q70EL1 AL596087.1-201ENST00000400979 1969 ntBASIC20.81■□□□□ 0.92
USP54Q70EL1 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP54Q70EL1 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
USP54Q70EL1 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 RPS3-201ENST00000278572 907 ntTSL 3 BASIC20.8■□□□□ 0.92
USP54Q70EL1 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC20.8■□□□□ 0.92
USP54Q70EL1 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC20.8■□□□□ 0.92
USP54Q70EL1 AC004898.1-201ENST00000451057 766 ntBASIC20.8■□□□□ 0.92
USP54Q70EL1 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 TPI1-206ENST00000488464 791 ntTSL 5 BASIC20.8■□□□□ 0.92
USP54Q70EL1 AC023310.1-201ENST00000554836 735 ntBASIC20.8■□□□□ 0.92
USP54Q70EL1 SAMD11P1-201ENST00000571429 661 ntBASIC20.8■□□□□ 0.92
USP54Q70EL1 RN7SL713P-201ENST00000582127 302 ntBASIC20.8■□□□□ 0.92
USP54Q70EL1 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC20.8■□□□□ 0.92
USP54Q70EL1 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC20.8■□□□□ 0.92
USP54Q70EL1 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
USP54Q70EL1 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.8■□□□□ 0.92
USP54Q70EL1 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms