Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 AC132872.4-202ENST00000622924 2756 ntBASIC18.64■□□□□ 0.57
CDKL5O76039 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC18.64■□□□□ 0.57
CDKL5O76039 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDKL5O76039 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDKL5O76039 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.64■□□□□ 0.57
CDKL5O76039 SPDYE14P-201ENST00000442619 822 ntBASIC18.64■□□□□ 0.57
CDKL5O76039 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.64■□□□□ 0.57
CDKL5O76039 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.64■□□□□ 0.57
CDKL5O76039 AC004967.1-201ENST00000453589 447 ntBASIC18.64■□□□□ 0.57
CDKL5O76039 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.64■□□□□ 0.57
CDKL5O76039 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.64■□□□□ 0.57
CDKL5O76039 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.64■□□□□ 0.57
CDKL5O76039 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.64■□□□□ 0.57
CDKL5O76039 AC026150.2-201ENST00000564693 1156 ntBASIC18.64■□□□□ 0.57
CDKL5O76039 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.64■□□□□ 0.57
CDKL5O76039 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.64■□□□□ 0.57
CDKL5O76039 AC134684.3-201ENST00000641758 218 ntBASIC18.64■□□□□ 0.57
CDKL5O76039 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.57
CDKL5O76039 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDKL5O76039 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.64■□□□□ 0.57
CDKL5O76039 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CDKL5O76039 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC18.64■□□□□ 0.57
CDKL5O76039 KRT8P37-201ENST00000451609 1420 ntBASIC18.64■□□□□ 0.57
CDKL5O76039 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDKL5O76039 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDKL5O76039 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDKL5O76039 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDKL5O76039 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.64■□□□□ 0.57
CDKL5O76039 ING5-213ENST00000636051 4199 ntTSL 5 BASIC18.63■□□□□ 0.57
CDKL5O76039 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 LOX-206ENST00000639739 1626 ntTSL 5 BASIC18.63■□□□□ 0.57
CDKL5O76039 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
CDKL5O76039 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CDKL5O76039 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.63■□□□□ 0.57
CDKL5O76039 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.63■□□□□ 0.57
CDKL5O76039 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.63■□□□□ 0.57
CDKL5O76039 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CDKL5O76039 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CDKL5O76039 EEF1DP4-201ENST00000446006 880 ntBASIC18.63■□□□□ 0.57
CDKL5O76039 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.63■□□□□ 0.57
CDKL5O76039 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.63■□□□□ 0.57
CDKL5O76039 SNHG9-202ENST00000564014 471 ntBASIC18.63■□□□□ 0.57
CDKL5O76039 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.63■□□□□ 0.57
CDKL5O76039 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC18.63■□□□□ 0.57
CDKL5O76039 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC18.63■□□□□ 0.57
CDKL5O76039 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CDKL5O76039 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC18.63■□□□□ 0.57
CDKL5O76039 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CDKL5O76039 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC18.63■□□□□ 0.57
CDKL5O76039 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.63■□□□□ 0.57
CDKL5O76039 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.63■□□□□ 0.57
CDKL5O76039 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CDKL5O76039 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC18.63■□□□□ 0.57
CDKL5O76039 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.62■□□□□ 0.57
CDKL5O76039 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDKL5O76039 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDKL5O76039 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.62■□□□□ 0.57
CDKL5O76039 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CDKL5O76039 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDKL5O76039 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDKL5O76039 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDKL5O76039 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDKL5O76039 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.62■□□□□ 0.57
CDKL5O76039 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CDKL5O76039 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.62■□□□□ 0.57
CDKL5O76039 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.62■□□□□ 0.57
CDKL5O76039 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDKL5O76039 AC105021.1-202ENST00000570572 669 ntBASIC18.62■□□□□ 0.57
CDKL5O76039 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.62■□□□□ 0.57
CDKL5O76039 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
CDKL5O76039 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDKL5O76039 AC003101.2-201ENST00000612557 442 ntBASIC18.62■□□□□ 0.57
CDKL5O76039 AC007967.4-201ENST00000614700 386 ntBASIC18.62■□□□□ 0.57
CDKL5O76039 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDKL5O76039 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDKL5O76039 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CDKL5O76039 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CDKL5O76039 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDKL5O76039 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDKL5O76039 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CDKL5O76039 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC18.62■□□□□ 0.57
CDKL5O76039 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms