Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SCN11AQ9UI33 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SCN11AQ9UI33 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
SCN11AQ9UI33 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SCN11AQ9UI33 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SCN11AQ9UI33 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SCN11AQ9UI33 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
SCN11AQ9UI33 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC20.22■□□□□ 0.83
SCN11AQ9UI33 NKILA-202ENST00000614771 2598 ntBASIC20.22■□□□□ 0.83
SCN11AQ9UI33 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SCN11AQ9UI33 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC20.22■□□□□ 0.83
SCN11AQ9UI33 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SCN11AQ9UI33 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SCN11AQ9UI33 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC20.22■□□□□ 0.83
SCN11AQ9UI33 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 B9D1-203ENST00000395615 805 ntTSL 3 BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 ABBA01031663.1-201ENST00000635630 790 ntBASIC20.21■□□□□ 0.83
SCN11AQ9UI33 GCK-209ENST00000616242 2260 ntTSL 5 BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 FRMD6-AS1-201ENST00000617151 2229 ntBASIC20.21■□□□□ 0.83
SCN11AQ9UI33 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 AC020907.1-201ENST00000616460 1350 ntBASIC20.21■□□□□ 0.83
SCN11AQ9UI33 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 AC138951.2-201ENST00000623455 1161 ntBASIC20.21■□□□□ 0.83
SCN11AQ9UI33 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SCN11AQ9UI33 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 AC018695.7-201ENST00000624587 2492 ntBASIC20.2■□□□□ 0.82
SCN11AQ9UI33 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 HARS-202ENST00000415192 1401 ntTSL 2 BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 MIR1202-201ENST00000408529 83 ntBASIC20.2■□□□□ 0.82
SCN11AQ9UI33 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 KRT18P25-201ENST00000508931 1278 ntBASIC20.2■□□□□ 0.82
SCN11AQ9UI33 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 AHRR-211ENST00000515206 462 ntTSL 5 BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 AP003171.2-201ENST00000528208 925 ntBASIC20.2■□□□□ 0.82
SCN11AQ9UI33 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 AC005695.3-201ENST00000614522 232 ntBASIC20.2■□□□□ 0.82
SCN11AQ9UI33 AC145423.3-201ENST00000615987 467 ntBASIC20.2■□□□□ 0.82
SCN11AQ9UI33 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC20.2■□□□□ 0.82
SCN11AQ9UI33 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SCN11AQ9UI33 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SCN11AQ9UI33 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC20.19■□□□□ 0.82
SCN11AQ9UI33 LINC02447-202ENST00000501888 2146 ntBASIC20.19■□□□□ 0.82
SCN11AQ9UI33 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SCN11AQ9UI33 AGER-214ENST00000538695 487 ntTSL 2 BASIC20.19■□□□□ 0.82
SCN11AQ9UI33 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SCN11AQ9UI33 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SCN11AQ9UI33 GPR182-203ENST00000622922 591 ntBASIC20.19■□□□□ 0.82
SCN11AQ9UI33 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
SCN11AQ9UI33 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SCN11AQ9UI33 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SCN11AQ9UI33 LOX-206ENST00000639739 1626 ntTSL 5 BASIC20.19■□□□□ 0.82
SCN11AQ9UI33 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SCN11AQ9UI33 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SCN11AQ9UI33 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC20.19■□□□□ 0.82
SCN11AQ9UI33 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SCN11AQ9UI33 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
SCN11AQ9UI33 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 SUN1-204ENST00000403868 978 ntTSL 2 BASIC20.18■□□□□ 0.82
SCN11AQ9UI33 MTX1P1-201ENST00000440904 838 ntBASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms