Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC13.01□□□□□ -0.33
CX3CL1P78423 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
CX3CL1P78423 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
CX3CL1P78423 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC13.01□□□□□ -0.33
CX3CL1P78423 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC13.01□□□□□ -0.33
CX3CL1P78423 AC026120.1-201ENST00000611536 926 ntBASIC13.01□□□□□ -0.33
CX3CL1P78423 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC13.01□□□□□ -0.33
CX3CL1P78423 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
CX3CL1P78423 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC13.01□□□□□ -0.33
CX3CL1P78423 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC13.01□□□□□ -0.33
CX3CL1P78423 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC13.01□□□□□ -0.33
CX3CL1P78423 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
CX3CL1P78423 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CL1P78423 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
CX3CL1P78423 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC13□□□□□ -0.33
CX3CL1P78423 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC13□□□□□ -0.33
CX3CL1P78423 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC13□□□□□ -0.33
CX3CL1P78423 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC13□□□□□ -0.33
CX3CL1P78423 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 ELL2P1-201ENST00000413990 1906 ntBASIC13□□□□□ -0.33
CX3CL1P78423 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
CX3CL1P78423 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CX3CL1P78423 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC13□□□□□ -0.33
CX3CL1P78423 ADH5P3-201ENST00000433842 1137 ntBASIC13□□□□□ -0.33
CX3CL1P78423 SPDYE11-202ENST00000450699 704 ntBASIC13□□□□□ -0.33
CX3CL1P78423 CEND1P1-201ENST00000451006 455 ntBASIC13□□□□□ -0.33
CX3CL1P78423 GATB-205ENST00000508611 605 ntTSL 2 BASIC13□□□□□ -0.33
CX3CL1P78423 CALM1-205ENST00000553542 877 ntTSL 5 BASIC13□□□□□ -0.33
CX3CL1P78423 AL138918.1-201ENST00000568306 659 ntBASIC13□□□□□ -0.33
CX3CL1P78423 SPDYE9P-201ENST00000570642 692 ntBASIC13□□□□□ -0.33
CX3CL1P78423 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC13□□□□□ -0.33
CX3CL1P78423 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC13□□□□□ -0.33
CX3CL1P78423 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC13□□□□□ -0.33
CX3CL1P78423 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC13□□□□□ -0.33
CX3CL1P78423 SPDYE10P-202ENST00000612005 668 ntBASIC13□□□□□ -0.33
CX3CL1P78423 SPDYE8P-202ENST00000612377 668 ntBASIC13□□□□□ -0.33
CX3CL1P78423 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
CX3CL1P78423 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CX3CL1P78423 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CX3CL1P78423 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CL1P78423 AL596087.1-201ENST00000400979 1969 ntBASIC13□□□□□ -0.33
CX3CL1P78423 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
CX3CL1P78423 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CL1P78423 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC12.99□□□□□ -0.33
CX3CL1P78423 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CL1P78423 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CL1P78423 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CL1P78423 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CX3CL1P78423 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC12.99□□□□□ -0.33
CX3CL1P78423 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CL1P78423 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CL1P78423 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
CX3CL1P78423 AL592424.1-201ENST00000563624 1536 ntBASIC12.99□□□□□ -0.33
CX3CL1P78423 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC12.99□□□□□ -0.33
CX3CL1P78423 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CL1P78423 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC12.99□□□□□ -0.33
CX3CL1P78423 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC12.99□□□□□ -0.33
CX3CL1P78423 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC12.99□□□□□ -0.33
CX3CL1P78423 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC12.99□□□□□ -0.33
CX3CL1P78423 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CL1P78423 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms