Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIM2P55344 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIM2P55344 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
LIM2P55344 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LIM2P55344 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.25■□□□□ 0.03
LIM2P55344 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.25■□□□□ 0.03
LIM2P55344 AL139010.1-201ENST00000454878 894 ntBASIC15.25■□□□□ 0.03
LIM2P55344 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.25■□□□□ 0.03
LIM2P55344 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.25■□□□□ 0.03
LIM2P55344 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.25■□□□□ 0.03
LIM2P55344 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.25■□□□□ 0.03
LIM2P55344 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.25■□□□□ 0.03
LIM2P55344 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.25■□□□□ 0.03
LIM2P55344 BANF1P1-201ENST00000553684 263 ntBASIC15.25■□□□□ 0.03
LIM2P55344 AC105021.1-202ENST00000570572 669 ntBASIC15.25■□□□□ 0.03
LIM2P55344 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.25■□□□□ 0.03
LIM2P55344 AC093028.1-201ENST00000622998 982 ntBASIC15.25■□□□□ 0.03
LIM2P55344 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.25■□□□□ 0.03
LIM2P55344 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIM2P55344 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LIM2P55344 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
LIM2P55344 AP005117.1-202ENST00000581724 1908 ntBASIC15.25■□□□□ 0.03
LIM2P55344 AC103702.1-201ENST00000548801 2630 ntBASIC15.25■□□□□ 0.03
LIM2P55344 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.25■□□□□ 0.03
LIM2P55344 AL691432.1-201ENST00000596308 1422 ntBASIC15.25■□□□□ 0.03
LIM2P55344 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LIM2P55344 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.25■□□□□ 0.03
LIM2P55344 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
LIM2P55344 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.25■□□□□ 0.03
LIM2P55344 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.24■□□□□ 0.03
LIM2P55344 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
LIM2P55344 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.24■□□□□ 0.03
LIM2P55344 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
LIM2P55344 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.24■□□□□ 0.03
LIM2P55344 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
LIM2P55344 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LIM2P55344 AL136982.4-201ENST00000437689 1740 ntBASIC15.24■□□□□ 0.03
LIM2P55344 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
LIM2P55344 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.24■□□□□ 0.03
LIM2P55344 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.24■□□□□ 0.03
LIM2P55344 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.24■□□□□ 0.03
LIM2P55344 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.24■□□□□ 0.03
LIM2P55344 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.24■□□□□ 0.03
LIM2P55344 AC243562.2-201ENST00000561247 970 ntBASIC15.24■□□□□ 0.03
LIM2P55344 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.24■□□□□ 0.03
LIM2P55344 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
LIM2P55344 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.24■□□□□ 0.03
LIM2P55344 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.24■□□□□ 0.03
LIM2P55344 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
LIM2P55344 AP001282.1-201ENST00000531301 1499 ntBASIC15.24■□□□□ 0.03
LIM2P55344 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LIM2P55344 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
LIM2P55344 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
LIM2P55344 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
LIM2P55344 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIM2P55344 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
LIM2P55344 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.23■□□□□ 0.03
LIM2P55344 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LIM2P55344 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
LIM2P55344 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.23■□□□□ 0.03
LIM2P55344 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.23■□□□□ 0.03
LIM2P55344 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.23■□□□□ 0.03
LIM2P55344 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.23■□□□□ 0.03
LIM2P55344 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
LIM2P55344 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIM2P55344 CNN2P2-201ENST00000443536 909 ntBASIC15.23■□□□□ 0.03
LIM2P55344 CNN2P3-201ENST00000450201 906 ntBASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms