Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
NKX2-1P43699 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
NKX2-1P43699 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.22□□□□□ -0.29
NKX2-1P43699 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC13.22□□□□□ -0.29
NKX2-1P43699 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
NKX2-1P43699 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC13.22□□□□□ -0.29
NKX2-1P43699 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC13.22□□□□□ -0.29
NKX2-1P43699 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC13.22□□□□□ -0.29
NKX2-1P43699 CIB2-208ENST00000560618 804 ntTSL 2 BASIC13.22□□□□□ -0.29
NKX2-1P43699 AC074051.2-201ENST00000565115 352 ntBASIC13.22□□□□□ -0.29
NKX2-1P43699 AC005412.3-201ENST00000580309 715 ntBASIC13.22□□□□□ -0.29
NKX2-1P43699 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
NKX2-1P43699 AL589182.2-201ENST00000619332 1049 ntBASIC13.22□□□□□ -0.29
NKX2-1P43699 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 AC116407.4-201ENST00000623319 1061 ntBASIC13.22□□□□□ -0.29
NKX2-1P43699 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC13.22□□□□□ -0.29
NKX2-1P43699 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
NKX2-1P43699 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
NKX2-1P43699 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
NKX2-1P43699 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
NKX2-1P43699 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
NKX2-1P43699 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC13.22□□□□□ -0.29
NKX2-1P43699 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC13.22□□□□□ -0.29
NKX2-1P43699 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC13.22□□□□□ -0.29
NKX2-1P43699 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX2-1P43699 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX2-1P43699 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.21□□□□□ -0.29
NKX2-1P43699 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX2-1P43699 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.29
NKX2-1P43699 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
NKX2-1P43699 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
NKX2-1P43699 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC13.21□□□□□ -0.29
NKX2-1P43699 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX2-1P43699 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC13.21□□□□□ -0.29
NKX2-1P43699 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
NKX2-1P43699 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
NKX2-1P43699 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX2-1P43699 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
NKX2-1P43699 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
NKX2-1P43699 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX2-1P43699 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC13.21□□□□□ -0.29
NKX2-1P43699 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
NKX2-1P43699 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
NKX2-1P43699 FXN-203ENST00000396366 922 ntTSL 2 BASIC13.21□□□□□ -0.29
NKX2-1P43699 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
NKX2-1P43699 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
NKX2-1P43699 PCED1CP-201ENST00000419887 785 ntBASIC13.21□□□□□ -0.29
NKX2-1P43699 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC13.21□□□□□ -0.29
NKX2-1P43699 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC13.21□□□□□ -0.29
NKX2-1P43699 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC13.21□□□□□ -0.29
NKX2-1P43699 AL160237.2-201ENST00000556165 472 ntBASIC13.21□□□□□ -0.29
NKX2-1P43699 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC13.21□□□□□ -0.29
NKX2-1P43699 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC13.21□□□□□ -0.29
NKX2-1P43699 TPSP2-201ENST00000561760 610 ntBASIC13.21□□□□□ -0.29
NKX2-1P43699 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC13.21□□□□□ -0.29
NKX2-1P43699 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC13.21□□□□□ -0.29
NKX2-1P43699 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC13.21□□□□□ -0.29
NKX2-1P43699 WT1-AS_2.1-201ENST00000613208 137 ntBASIC13.21□□□□□ -0.29
NKX2-1P43699 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
NKX2-1P43699 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC13.21□□□□□ -0.29
NKX2-1P43699 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC13.21□□□□□ -0.29
NKX2-1P43699 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.21□□□□□ -0.29
NKX2-1P43699 AC023908.3-201ENST00000564211 3047 ntBASIC13.21□□□□□ -0.29
NKX2-1P43699 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
NKX2-1P43699 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
NKX2-1P43699 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
NKX2-1P43699 AP005117.1-201ENST00000584346 1413 ntBASIC13.21□□□□□ -0.3
NKX2-1P43699 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
NKX2-1P43699 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
NKX2-1P43699 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC13.21□□□□□ -0.3
NKX2-1P43699 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
NKX2-1P43699 AC026748.1-201ENST00000624349 3251 ntBASIC13.21□□□□□ -0.3
NKX2-1P43699 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.21□□□□□ -0.3
NKX2-1P43699 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
NKX2-1P43699 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
NKX2-1P43699 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
NKX2-1P43699 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-1P43699 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-1P43699 IER3-202ENST00000376377 1350 ntBASIC13.2□□□□□ -0.3
NKX2-1P43699 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-1P43699 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-1P43699 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-1P43699 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-1P43699 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-1P43699 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms