Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC20.87■□□□□ 0.93
COL3A1P02461 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC20.87■□□□□ 0.93
COL3A1P02461 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC20.87■□□□□ 0.93
COL3A1P02461 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL3A1P02461 AC010319.3-201ENST00000597028 470 ntBASIC20.87■□□□□ 0.93
COL3A1P02461 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC20.87■□□□□ 0.93
COL3A1P02461 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC20.87■□□□□ 0.93
COL3A1P02461 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC20.87■□□□□ 0.93
COL3A1P02461 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
COL3A1P02461 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL3A1P02461 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL3A1P02461 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL3A1P02461 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
COL3A1P02461 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC20.86■□□□□ 0.93
COL3A1P02461 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL3A1P02461 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL3A1P02461 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL3A1P02461 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC20.86■□□□□ 0.93
COL3A1P02461 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
COL3A1P02461 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC20.86■□□□□ 0.93
COL3A1P02461 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC20.86■□□□□ 0.93
COL3A1P02461 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL3A1P02461 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC20.86■□□□□ 0.93
COL3A1P02461 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC20.86■□□□□ 0.93
COL3A1P02461 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL3A1P02461 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC20.86■□□□□ 0.93
COL3A1P02461 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC20.86■□□□□ 0.93
COL3A1P02461 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
COL3A1P02461 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC20.85■□□□□ 0.93
COL3A1P02461 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL3A1P02461 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL3A1P02461 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL3A1P02461 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC20.85■□□□□ 0.93
COL3A1P02461 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL3A1P02461 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC20.85■□□□□ 0.93
COL3A1P02461 TTTY23B-201ENST00000442790 549 ntBASIC20.85■□□□□ 0.93
COL3A1P02461 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC20.85■□□□□ 0.93
COL3A1P02461 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC20.85■□□□□ 0.93
COL3A1P02461 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
COL3A1P02461 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC20.85■□□□□ 0.93
COL3A1P02461 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL3A1P02461 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC20.85■□□□□ 0.93
COL3A1P02461 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL3A1P02461 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL3A1P02461 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC20.84■□□□□ 0.93
COL3A1P02461 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
COL3A1P02461 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL3A1P02461 KRT8P22-201ENST00000562317 1415 ntBASIC20.84■□□□□ 0.93
COL3A1P02461 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL3A1P02461 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL3A1P02461 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL3A1P02461 TEX30-203ENST00000376022 828 ntTSL 2 BASIC20.84■□□□□ 0.93
COL3A1P02461 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL3A1P02461 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC20.84■□□□□ 0.93
COL3A1P02461 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC20.84■□□□□ 0.93
COL3A1P02461 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC20.84■□□□□ 0.93
COL3A1P02461 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC20.84■□□□□ 0.93
COL3A1P02461 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL3A1P02461 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL3A1P02461 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL3A1P02461 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC20.84■□□□□ 0.93
COL3A1P02461 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL3A1P02461 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL3A1P02461 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC20.84■□□□□ 0.93
COL3A1P02461 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL3A1P02461 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
COL3A1P02461 AC079328.2-201ENST00000561241 3354 ntBASIC20.84■□□□□ 0.93
COL3A1P02461 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC20.84■□□□□ 0.93
COL3A1P02461 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
COL3A1P02461 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL3A1P02461 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL3A1P02461 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL3A1P02461 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC20.83■□□□□ 0.93
COL3A1P02461 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL3A1P02461 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL3A1P02461 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL3A1P02461 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL3A1P02461 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC20.83■□□□□ 0.93
COL3A1P02461 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC20.83■□□□□ 0.93
COL3A1P02461 AL162726.2-201ENST00000438986 1017 ntBASIC20.83■□□□□ 0.93
COL3A1P02461 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC20.83■□□□□ 0.93
COL3A1P02461 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC20.83■□□□□ 0.93
COL3A1P02461 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
COL3A1P02461 RN7SL752P-201ENST00000463779 287 ntBASIC20.83■□□□□ 0.93
COL3A1P02461 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC20.83■□□□□ 0.93
COL3A1P02461 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC20.83■□□□□ 0.93
COL3A1P02461 CLUHP6-201ENST00000580789 941 ntBASIC20.83■□□□□ 0.93
COL3A1P02461 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC20.83■□□□□ 0.93
COL3A1P02461 AC084364.1-201ENST00000551967 1556 ntBASIC20.83■□□□□ 0.93
COL3A1P02461 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL3A1P02461 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL3A1P02461 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL3A1P02461 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL3A1P02461 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL3A1P02461 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC20.83■□□□□ 0.93
COL3A1P02461 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL3A1P02461 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL3A1P02461 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL3A1P02461 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL3A1P02461 HLA-DQB2-231ENST00000435145 2026 ntBASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms