Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.14■□□□□ 0.18
TRIM49D1C9J1S8 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
TRIM49D1C9J1S8 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.14■□□□□ 0.18
TRIM49D1C9J1S8 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.18
TRIM49D1C9J1S8 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 RPS2P28-201ENST00000314255 741 ntBASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 IGLL3P-201ENST00000412472 434 ntBASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 AC092910.1-201ENST00000482027 1129 ntBASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 AC109635.5-201ENST00000533593 962 ntBASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 AL009183.1-201ENST00000603760 355 ntBASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 FAM215A-202ENST00000632077 792 ntBASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 AC134407.2-201ENST00000625089 1978 ntBASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 AP001282.1-201ENST00000531301 1499 ntBASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.14■□□□□ 0.17
TRIM49D1C9J1S8 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 AC073439.1-201ENST00000624121 1774 ntBASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 VN2R19P-201ENST00000442399 1052 ntBASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 EMBP1-201ENST00000458200 901 ntBASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 MIR4321-201ENST00000592276 80 ntBASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 AL121912.1-201ENST00000603683 238 ntBASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 AL589702.1-201ENST00000641229 1509 ntBASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
TRIM49D1C9J1S8 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms