Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 AL607033.1-201ENST00000623900 1599 ntBASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 AC112492.5-201ENST00000421897 457 ntBASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 AC007274.1-201ENST00000439805 662 ntBASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 ATP5G2P4-201ENST00000442175 420 ntBASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 TTTY23B-201ENST00000442790 549 ntBASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.02■□□□□ 0.32
PAAF1Q9BRP4 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.02■□□□□ 0.31
PAAF1Q9BRP4 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
PAAF1Q9BRP4 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.02■□□□□ 0.31
PAAF1Q9BRP4 AL596087.1-201ENST00000400979 1969 ntBASIC17.02■□□□□ 0.31
PAAF1Q9BRP4 LINC02199-201ENST00000506655 2702 ntBASIC17.02■□□□□ 0.31
PAAF1Q9BRP4 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PAAF1Q9BRP4 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PAAF1Q9BRP4 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PAAF1Q9BRP4 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PAAF1Q9BRP4 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 AC136604.1-201ENST00000418535 575 ntBASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 IGHV3-71-201ENST00000523324 359 ntBASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 AL033527.5-201ENST00000641382 801 ntBASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PAAF1Q9BRP4 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
PAAF1Q9BRP4 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17■□□□□ 0.31
PAAF1Q9BRP4 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms