Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.12□□□□□ -0.15
NKX3-1Q99801 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
NKX3-1Q99801 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 AL592424.1-201ENST00000563624 1536 ntBASIC14.11□□□□□ -0.15
NKX3-1Q99801 AC012569.1-201ENST00000591191 1524 ntBASIC14.11□□□□□ -0.15
NKX3-1Q99801 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 KRT18P67-201ENST00000432816 1264 ntBASIC14.11□□□□□ -0.15
NKX3-1Q99801 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 STARD13-205ENST00000439831 945 ntTSL 2 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 AC004790.2-201ENST00000623588 572 ntBASIC14.11□□□□□ -0.15
NKX3-1Q99801 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
NKX3-1Q99801 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
NKX3-1Q99801 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 AC016027.1-202ENST00000607927 1699 ntBASIC14.1□□□□□ -0.15
NKX3-1Q99801 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 AL022342.1-201ENST00000400363 863 ntBASIC14.1□□□□□ -0.15
NKX3-1Q99801 HCG4-201ENST00000418983 998 ntBASIC14.1□□□□□ -0.15
NKX3-1Q99801 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 AL590627.1-203ENST00000421194 1026 ntBASIC14.1□□□□□ -0.15
NKX3-1Q99801 AC108073.2-201ENST00000464002 357 ntBASIC14.1□□□□□ -0.15
NKX3-1Q99801 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 RPS15-207ENST00000591032 550 ntTSL 3 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms