Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
DEPDC4Q8N2C3 CICP14-201ENST00000629111 2732 ntBASIC15.08■□□□□ 0.01
DEPDC4Q8N2C3 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.08■□□□□ 0.01
DEPDC4Q8N2C3 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC15.08■□□□□ 0.01
DEPDC4Q8N2C3 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.08■□□□□ 0.01
DEPDC4Q8N2C3 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.08■□□□□ 0.01
DEPDC4Q8N2C3 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
DEPDC4Q8N2C3 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.08■□□□□ 0.01
DEPDC4Q8N2C3 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.08■□□□□ 0.01
DEPDC4Q8N2C3 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
DEPDC4Q8N2C3 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 TNRC18P2-201ENST00000417666 2714 ntBASIC15.08■□□□□ 0
DEPDC4Q8N2C3 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 MIR574-201ENST00000385209 96 ntBASIC15.08■□□□□ 0
DEPDC4Q8N2C3 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 AC136632.2-201ENST00000512891 861 ntBASIC15.08■□□□□ 0
DEPDC4Q8N2C3 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 AL356488.2-201ENST00000602755 427 ntBASIC15.08■□□□□ 0
DEPDC4Q8N2C3 AC010654.1-201ENST00000615722 808 ntBASIC15.08■□□□□ 0
DEPDC4Q8N2C3 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 AC007326.2-201ENST00000624224 7579 ntBASIC15.08■□□□□ 0
DEPDC4Q8N2C3 AC016027.1-202ENST00000607927 1699 ntBASIC15.08■□□□□ 0
DEPDC4Q8N2C3 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 AL590787.1-201ENST00000568856 1315 ntBASIC15.08■□□□□ 0
DEPDC4Q8N2C3 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 GID4-202ENST00000376345 1391 ntTSL 3 BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
DEPDC4Q8N2C3 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 OR2I1P-210ENST00000642037 4691 ntBASIC15.07■□□□□ 0
DEPDC4Q8N2C3 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 MIR940-201ENST00000401276 94 ntBASIC15.07■□□□□ 0
DEPDC4Q8N2C3 AC010740.1-201ENST00000417035 684 ntBASIC15.07■□□□□ 0
DEPDC4Q8N2C3 AL591424.1-201ENST00000442569 1213 ntBASIC15.07■□□□□ 0
DEPDC4Q8N2C3 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 Z83851.2-201ENST00000609564 659 ntBASIC15.07■□□□□ 0
DEPDC4Q8N2C3 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 AC104109.2-201ENST00000602919 1418 ntBASIC15.07■□□□□ 0
DEPDC4Q8N2C3 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
DEPDC4Q8N2C3 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms