Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.05■□□□□ 0.32
USP41Q3LFD5 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP41Q3LFD5 AL596257.1-201ENST00000641463 2694 ntBASIC17.04■□□□□ 0.32
USP41Q3LFD5 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 NSL1-201ENST00000366976 722 ntTSL 2 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 AZGP1P1-201ENST00000411909 902 ntBASIC17.04■□□□□ 0.32
USP41Q3LFD5 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 TTTY23B-201ENST00000442790 549 ntBASIC17.04■□□□□ 0.32
USP41Q3LFD5 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.04■□□□□ 0.32
USP41Q3LFD5 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP41Q3LFD5 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 PGF-202ENST00000405431 666 ntTSL 5 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 KRT17P8-201ENST00000540749 863 ntBASIC17.03■□□□□ 0.32
USP41Q3LFD5 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 AC017083.2-201ENST00000608069 979 ntBASIC17.03■□□□□ 0.32
USP41Q3LFD5 WFDC1-204ENST00000613603 549 ntBASIC17.03■□□□□ 0.32
USP41Q3LFD5 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.03■□□□□ 0.32
USP41Q3LFD5 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP41Q3LFD5 CLK3P2-201ENST00000427566 1453 ntBASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms