Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC14.76□□□□□ -0.05
MSX1P28360 MIR6080-201ENST00000617359 66 ntBASIC14.76□□□□□ -0.05
MSX1P28360 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.76□□□□□ -0.05
MSX1P28360 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.76□□□□□ -0.05
MSX1P28360 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC14.76□□□□□ -0.05
MSX1P28360 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.76□□□□□ -0.05
MSX1P28360 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
MSX1P28360 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.76□□□□□ -0.05
MSX1P28360 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX1P28360 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.76□□□□□ -0.05
MSX1P28360 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
MSX1P28360 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.75□□□□□ -0.05
MSX1P28360 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.75□□□□□ -0.05
MSX1P28360 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 AL035456.1-201ENST00000456064 1369 ntBASIC14.75□□□□□ -0.05
MSX1P28360 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.75□□□□□ -0.05
MSX1P28360 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.75□□□□□ -0.05
MSX1P28360 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC14.75□□□□□ -0.05
MSX1P28360 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
MSX1P28360 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.75□□□□□ -0.05
MSX1P28360 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.75□□□□□ -0.05
MSX1P28360 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.75□□□□□ -0.05
MSX1P28360 AL139010.1-201ENST00000454878 894 ntBASIC14.75□□□□□ -0.05
MSX1P28360 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.75□□□□□ -0.05
MSX1P28360 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC14.75□□□□□ -0.05
MSX1P28360 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.75□□□□□ -0.05
MSX1P28360 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.75□□□□□ -0.05
MSX1P28360 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
MSX1P28360 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
MSX1P28360 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
MSX1P28360 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
MSX1P28360 AP001282.1-201ENST00000531301 1499 ntBASIC14.75□□□□□ -0.05
MSX1P28360 AL513523.2-202ENST00000427283 2040 ntBASIC14.75□□□□□ -0.05
MSX1P28360 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.75□□□□□ -0.05
MSX1P28360 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.75□□□□□ -0.05
MSX1P28360 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC14.75□□□□□ -0.05
MSX1P28360 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
MSX1P28360 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.75□□□□□ -0.05
MSX1P28360 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX1P28360 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC14.75□□□□□ -0.05
MSX1P28360 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX1P28360 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
MSX1P28360 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
MSX1P28360 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX1P28360 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX1P28360 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX1P28360 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
MSX1P28360 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC14.74□□□□□ -0.05
MSX1P28360 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX1P28360 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.74□□□□□ -0.05
MSX1P28360 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX1P28360 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX1P28360 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX1P28360 AL662844.4-201ENST00000606367 2838 ntBASIC14.74□□□□□ -0.05
MSX1P28360 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
MSX1P28360 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
MSX1P28360 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
MSX1P28360 CD81-202ENST00000381036 880 ntTSL 3 BASIC14.74□□□□□ -0.05
MSX1P28360 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.74□□□□□ -0.05
MSX1P28360 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.74□□□□□ -0.05
MSX1P28360 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX1P28360 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.74□□□□□ -0.05
MSX1P28360 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.74□□□□□ -0.05
MSX1P28360 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX1P28360 AC243562.2-201ENST00000561247 970 ntBASIC14.74□□□□□ -0.05
MSX1P28360 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.74□□□□□ -0.05
MSX1P28360 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.74□□□□□ -0.05
MSX1P28360 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.74□□□□□ -0.05
MSX1P28360 AC007967.4-201ENST00000614700 386 ntBASIC14.74□□□□□ -0.05
MSX1P28360 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX1P28360 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.74□□□□□ -0.05
MSX1P28360 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX1P28360 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms