Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 MED15P5-201ENST00000423150 992 ntBASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 AL671277.1-201ENST00000429656 993 ntBASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 PAM16-215ENST00000577031 548 ntTSL 4 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 GSN-206ENST00000394353 2311 ntTSL 2 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 AL691432.1-201ENST00000596308 1422 ntBASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
LIMCH1Q9UPQ0 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 AL355306.1-201ENST00000415580 579 ntBASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 AC027307.2-201ENST00000591252 911 ntBASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 AC008267.7-201ENST00000624570 1194 ntBASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 AC105250.1-201ENST00000509378 2057 ntBASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIMCH1Q9UPQ0 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 TFAMP1-201ENST00000412727 736 ntBASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 AC243562.2-201ENST00000561247 970 ntBASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 AL135744.1-201ENST00000565098 629 ntBASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 AC120114.3-201ENST00000611923 658 ntBASIC18.95■□□□□ 0.62
LIMCH1Q9UPQ0 AC091812.2-201ENST00000619081 385 ntBASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms