Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 AL022328.3-201ENST00000607943 679 ntBASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
SHANK3Q9BYB0 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 AC120498.9-201ENST00000339021 3867 ntBASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 MIR4706-201ENST00000582134 82 ntBASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 FLJ38576-201ENST00000623820 2459 ntBASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SHANK3Q9BYB0 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 AL354989.2-201ENST00000435838 1540 ntBASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 AC138028.6-201ENST00000616106 1482 ntBASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 CSH2-202ENST00000345366 598 ntTSL 5 BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 B9D1-203ENST00000395615 805 ntTSL 3 BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 EIF3FP3-201ENST00000434851 1086 ntBASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 TSACC-208ENST00000481479 741 ntTSL 2 BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 AC097724.1-201ENST00000609581 426 ntBASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 AL023775.1-201ENST00000454907 1746 ntBASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SHANK3Q9BYB0 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 SDCCAG3P2-201ENST00000326105 1023 ntBASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 KLF2P2-201ENST00000416807 1039 ntBASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 DEF8-202ENST00000418391 852 ntTSL 2 BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 AC005730.2-201ENST00000564549 1184 ntBASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 AP005019.2-201ENST00000615104 511 ntBASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
SHANK3Q9BYB0 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC20.33■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms