Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC13.81□□□□□ -0.2
COL12A1Q99715 HSPB1P2-201ENST00000448722 546 ntBASIC13.81□□□□□ -0.2
COL12A1Q99715 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC13.81□□□□□ -0.2
COL12A1Q99715 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL12A1Q99715 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC13.81□□□□□ -0.2
COL12A1Q99715 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC13.81□□□□□ -0.2
COL12A1Q99715 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC13.81□□□□□ -0.2
COL12A1Q99715 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC13.81□□□□□ -0.2
COL12A1Q99715 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL12A1Q99715 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL12A1Q99715 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL12A1Q99715 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL12A1Q99715 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL12A1Q99715 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC13.81□□□□□ -0.2
COL12A1Q99715 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.81□□□□□ -0.2
COL12A1Q99715 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC13.81□□□□□ -0.2
COL12A1Q99715 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
COL12A1Q99715 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC13.81□□□□□ -0.2
COL12A1Q99715 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC13.81□□□□□ -0.2
COL12A1Q99715 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC13.81□□□□□ -0.2
COL12A1Q99715 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC13.81□□□□□ -0.2
COL12A1Q99715 C1QBPP1-201ENST00000400117 770 ntBASIC13.81□□□□□ -0.2
COL12A1Q99715 FAU-202ENST00000434372 533 ntTSL 2 BASIC13.81□□□□□ -0.2
COL12A1Q99715 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL12A1Q99715 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC13.81□□□□□ -0.2
COL12A1Q99715 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC13.81□□□□□ -0.2
COL12A1Q99715 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC13.81□□□□□ -0.2
COL12A1Q99715 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC13.81□□□□□ -0.2
COL12A1Q99715 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
COL12A1Q99715 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL12A1Q99715 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL12A1Q99715 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL12A1Q99715 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL12A1Q99715 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL12A1Q99715 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL12A1Q99715 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
COL12A1Q99715 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
COL12A1Q99715 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL12A1Q99715 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC13.81□□□□□ -0.2
COL12A1Q99715 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC13.8□□□□□ -0.2
COL12A1Q99715 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 CSH2-206ENST00000560142 749 ntTSL 5 BASIC13.8□□□□□ -0.2
COL12A1Q99715 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC13.8□□□□□ -0.2
COL12A1Q99715 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC13.8□□□□□ -0.2
COL12A1Q99715 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC13.8□□□□□ -0.2
COL12A1Q99715 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
COL12A1Q99715 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
COL12A1Q99715 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
COL12A1Q99715 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC13.8□□□□□ -0.2
COL12A1Q99715 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC13.8□□□□□ -0.2
COL12A1Q99715 FGFR3P1-201ENST00000449999 601 ntBASIC13.8□□□□□ -0.2
COL12A1Q99715 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC13.8□□□□□ -0.2
COL12A1Q99715 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC13.8□□□□□ -0.2
COL12A1Q99715 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC13.8□□□□□ -0.2
COL12A1Q99715 BX539320.1-201ENST00000623759 877 ntBASIC13.8□□□□□ -0.2
COL12A1Q99715 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC13.8□□□□□ -0.2
COL12A1Q99715 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
COL12A1Q99715 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC13.8□□□□□ -0.2
COL12A1Q99715 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC13.8□□□□□ -0.2
COL12A1Q99715 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC13.8□□□□□ -0.2
COL12A1Q99715 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL12A1Q99715 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
COL12A1Q99715 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC13.79□□□□□ -0.2
COL12A1Q99715 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
COL12A1Q99715 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
COL12A1Q99715 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
COL12A1Q99715 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC13.79□□□□□ -0.2
COL12A1Q99715 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 FTLP5-201ENST00000586853 534 ntBASIC13.79□□□□□ -0.2
COL12A1Q99715 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC13.79□□□□□ -0.2
COL12A1Q99715 AC100757.4-201ENST00000626934 759 ntBASIC13.79□□□□□ -0.2
COL12A1Q99715 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL12A1Q99715 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
COL12A1Q99715 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms