Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
RORAP35398 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.31■□□□□ 0.04
RORAP35398 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.31■□□□□ 0.04
RORAP35398 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.31■□□□□ 0.04
RORAP35398 ME2P1-201ENST00000426028 1970 ntBASIC15.31■□□□□ 0.04
RORAP35398 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 METTL26-204ENST00000397665 558 ntTSL 2 BASIC15.31■□□□□ 0.04
RORAP35398 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.31■□□□□ 0.04
RORAP35398 AL139010.1-201ENST00000454878 894 ntBASIC15.31■□□□□ 0.04
RORAP35398 SERBP1P3-201ENST00000459980 809 ntBASIC15.31■□□□□ 0.04
RORAP35398 RBM7-207ENST00000544582 692 ntTSL 3 BASIC15.31■□□□□ 0.04
RORAP35398 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.31■□□□□ 0.04
RORAP35398 MIR4321-201ENST00000592276 80 ntBASIC15.31■□□□□ 0.04
RORAP35398 AL365330.1-201ENST00000607459 531 ntBASIC15.31■□□□□ 0.04
RORAP35398 AL662799.1-202ENST00000614205 422 ntBASIC15.31■□□□□ 0.04
RORAP35398 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.31■□□□□ 0.04
RORAP35398 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.31■□□□□ 0.04
RORAP35398 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
RORAP35398 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
RORAP35398 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
RORAP35398 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
RORAP35398 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.31■□□□□ 0.04
RORAP35398 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.31■□□□□ 0.04
RORAP35398 ALOX12P2-203ENST00000570921 1945 ntBASIC15.31■□□□□ 0.04
RORAP35398 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.31■□□□□ 0.04
RORAP35398 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.31■□□□□ 0.04
RORAP35398 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RORAP35398 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.3■□□□□ 0.04
RORAP35398 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
RORAP35398 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
RORAP35398 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
RORAP35398 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.3■□□□□ 0.04
RORAP35398 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.3■□□□□ 0.04
RORAP35398 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
RORAP35398 AP005018.1-201ENST00000525475 301 ntBASIC15.3■□□□□ 0.04
RORAP35398 RNA5-8SN1-201ENST00000610460 153 ntBASIC15.3■□□□□ 0.04
RORAP35398 RNA5-8SN5-202ENST00000612463 153 ntBASIC15.3■□□□□ 0.04
RORAP35398 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.3■□□□□ 0.04
RORAP35398 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.3■□□□□ 0.04
RORAP35398 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.3■□□□□ 0.04
RORAP35398 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
RORAP35398 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
RORAP35398 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.3■□□□□ 0.04
RORAP35398 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RORAP35398 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
RORAP35398 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
RORAP35398 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.3■□□□□ 0.04
RORAP35398 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RORAP35398 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
RORAP35398 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RORAP35398 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
RORAP35398 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RORAP35398 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
RORAP35398 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
RORAP35398 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RORAP35398 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RORAP35398 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RORAP35398 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RORAP35398 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RORAP35398 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.29■□□□□ 0.04
RORAP35398 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
RORAP35398 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RORAP35398 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RORAP35398 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC15.29■□□□□ 0.04
RORAP35398 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.29■□□□□ 0.04
RORAP35398 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RORAP35398 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RORAP35398 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms