Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 AC012645.4-201ENST00000610691 1061 ntBASIC16.27■□□□□ 0.2
TRIM38O00635 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM38O00635 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.27■□□□□ 0.2
TRIM38O00635 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM38O00635 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.27■□□□□ 0.2
TRIM38O00635 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRIM38O00635 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
TRIM38O00635 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM38O00635 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM38O00635 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM38O00635 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
TRIM38O00635 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRIM38O00635 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.27■□□□□ 0.19
TRIM38O00635 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.27■□□□□ 0.19
TRIM38O00635 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
TRIM38O00635 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 AC005052.1-201ENST00000625181 2492 ntBASIC16.26■□□□□ 0.19
TRIM38O00635 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM38O00635 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM38O00635 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM38O00635 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
TRIM38O00635 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM38O00635 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
TRIM38O00635 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM38O00635 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.26■□□□□ 0.19
TRIM38O00635 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.26■□□□□ 0.19
TRIM38O00635 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.26■□□□□ 0.19
TRIM38O00635 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.26■□□□□ 0.19
TRIM38O00635 AC005225.4-201ENST00000557330 545 ntBASIC16.26■□□□□ 0.19
TRIM38O00635 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.26■□□□□ 0.19
TRIM38O00635 CYP2A7P1-201ENST00000595391 815 ntBASIC16.26■□□□□ 0.19
TRIM38O00635 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.26■□□□□ 0.19
TRIM38O00635 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM38O00635 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.26■□□□□ 0.19
TRIM38O00635 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM38O00635 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.26■□□□□ 0.19
TRIM38O00635 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 AC092384.3-202ENST00000564646 2873 ntBASIC16.26■□□□□ 0.19
TRIM38O00635 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
TRIM38O00635 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRIM38O00635 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.26■□□□□ 0.19
TRIM38O00635 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.26■□□□□ 0.19
TRIM38O00635 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.26■□□□□ 0.19
TRIM38O00635 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM38O00635 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM38O00635 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM38O00635 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM38O00635 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM38O00635 AC063926.2-201ENST00000623766 1308 ntBASIC16.25■□□□□ 0.19
TRIM38O00635 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
TRIM38O00635 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM38O00635 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM38O00635 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM38O00635 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM38O00635 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TRIM38O00635 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM38O00635 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM38O00635 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM38O00635 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM38O00635 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.25■□□□□ 0.19
TRIM38O00635 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.25■□□□□ 0.19
TRIM38O00635 AC142381.1-201ENST00000426099 345 ntBASIC16.25■□□□□ 0.19
TRIM38O00635 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TRIM38O00635 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.25■□□□□ 0.19
TRIM38O00635 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.25■□□□□ 0.19
TRIM38O00635 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM38O00635 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.25■□□□□ 0.19
TRIM38O00635 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.25■□□□□ 0.19
TRIM38O00635 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TRIM38O00635 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM38O00635 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM38O00635 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM38O00635 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM38O00635 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM38O00635 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC16.25■□□□□ 0.19
TRIM38O00635 KRT8P49-201ENST00000604166 1432 ntBASIC16.25■□□□□ 0.19
TRIM38O00635 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TRIM38O00635 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
TRIM38O00635 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRIM38O00635 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms